Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001603.1 Length=479 Score E Sequences producing significant alignments: (Bits) Value seq520379 358 2e-96 seq360256 264 3e-68 seq288473 237 4e-60 seq357491 181 3e-43 seq186571 179 1e-42 >seq520379 Length=682 Score = 358 bits (396), Expect = 2e-96 Identities = 319/405 (79%), Gaps = 21/405 (5%) Strand=Plus/Minus Query 74 CAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGATGGCGTCGGCCAGGTCA 133 |||||||| ||| || |||||||||||||||||| ||||||||||||||||| | Sbjct 496 CAGGCCTCGGTCAGGTGTCTGCCGATGTCGTCCAGGCCATAGATGGCGTCGGCCAGATTG 437 Query 134 GCCTTGACGATGGCCATGGGCATGCCATAGATCACGCAGCTGGCTTCGTCCTGGGCCCAG 193 |||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 436 GCCTTGGCGATGGCCATGGGCATGCCGTAGATGACGCAACTGGCTTCGTCCTGGGCCCAC 377 Query 194 ATCACACTGCCGCCCTGCTTGAGCAGGCGCGCGCCTTCACGGCCGTCGGCGCCCATGCTC 253 | | || ||| ||||||||||| || |||||||| ||||||||||||||||||| | Sbjct 376 ACCTGGCTACCGGACTGCTTGAGCATCCGGGCGCCTTCGCGGCCGTCGGCGCCCATGC-C 318 Query 254 GGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTTGGCGGCCGAACCGAAGGTGAT 313 ||| |||||||||||||| || |||||| | |||| |||||| || || || ||||| | Sbjct 317 GGTCAGGACCACCGCCAGCACCTTGTCGGCATAGGCCTTGGCCGCGGAGCCAAAGGTCAC 258 Query 314 GTCCACGCACGGCTTGTAGTTCAGGCGTTCATCCCCCGGCAGGATTTTGATCGCGCCACG 373 ||| ||||| ||||||||||| | || ||| || Sbjct 257 GTCGACGCAGGGCTTGTAGTT-----------------GNNNNNNNNNNAT---GCCGCG 218 Query 374 GCCATCCACCATCATCTGCTTGCCACCCGGGGCCAGCAGCGCCAGGCCAGGGCGCAGGAT 433 ||| || ||||||||||||||||||||||| |||||||| |||||||| || ||||| Sbjct 217 GCCGTCGACCATCATCTGCTTGCCACCCGGTGCCAGCAGGGCCAGGCCCGGACGCAGCTG 158 Query 434 GTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGATTGTC 478 ||| || ||||||||||||||||||||||||||||| || ||||| Sbjct 157 GTCACCGTCCTCGGCTTCCTTGACGCTGATGCGGCAAAGCTTGTC 113 >seq360256 Length=477 Score = 264 bits (292), Expect = 3e-68 Identities = 204/241 (85%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 238 GTCGGCGCCCATGCTCGGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTTGGCGG 297 |||||||||||||| |||| || ||||| ||||| || |||||| ||| |||||||| | Sbjct 477 GTCGGCGCCCATGC-CGGTCAGCACCACGGCCAGCACCTTGTCGTTGTACGACTTGGCCG 419 Query 298 CCGAACCGAAGGTGATGTCCACGCACGGCTTGTAGTTCAGGCGTTCATCCCCCGGCAGGA 357 |||| |||||||||||||||||||| ||||||||||||||||| || || || ||||||| Sbjct 418 CCGATCCGAAGGTGATGTCCACGCAGGGCTTGTAGTTCAGGCGCTCGTCACCGGGCAGGA 359 Query 358 TTTTGATCGCGCCACGGCCATCCACCATCATCTGCTTGCCACCCGGGGCCAGCAGCGCCA 417 | || | ||||||||| || | ||||||||||||||| ||||| ||||| | |||| Sbjct 358 TGCGAATGGTGCCACGGCCGTCGATCATCATCTGCTTGCCGCCCGGTGCCAGGATGGCCA 299 Query 418 GGCCAGGGCGCAGGATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGATTGT 477 |||| |||||||||||||||||||||||||||||||||||| |||| ||| || |||| Sbjct 298 GGCCGGGGCGCAGGATGTCGCCATCCTCGGCTTCCTTGACGTTGATCTTGCAGAGCTTGT 239 Query 478 C 478 | Sbjct 238 C 238 >seq288473 Length=226 Score = 237 bits (262), Expect = 4e-60 Identities = 189/226 (84%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 238 GTCGGCGCCCATGCTCGGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTTGGCGG 297 |||||||||||||| |||| || ||||| ||||| || |||||| ||| |||||||| | Sbjct 226 GTCGGCGCCCATGC-CGGTCAGCACCACGGCCAGCACCTTGTCGTTGTACGACTTGGCCG 168 Query 298 CCGAACCGAAGGTGATGTCCACGCACGGCTTGTAGTTCAGGCGTTCATCCCCCGGCAGGA 357 ||||||||||||||||||||||||| |||||||| || || || || || || ||||||| Sbjct 167 CCGAACCGAAGGTGATGTCCACGCAGGGCTTGTAATTGAGCCGCTCGTCACCGGGCAGGA 108 Query 358 TTTTGATCGCGCCACGGCCATCCACCATCATCTGCTTGCCACCCGGGGCCAGCAGCGCCA 417 | ||| | ||| ||||| || | ||||||||||||||| ||||| ||||| | |||| Sbjct 107 TGCGGATGGTGCCGCGGCCGTCGATCATCATCTGCTTGCCGCCCGGCGCCAGAATGGCCA 48 Query 418 GGCCAGGGCGCAGGATGTCGCCATCCTCGGCTTCCTTGACGCTGAT 463 | || ||||||||||| ||||| |||||||||||||||||| |||| Sbjct 47 GCCCGGGGCGCAGGATATCGCCGTCCTCGGCTTCCTTGACGTTGAT 2 >seq357491 Length=477 Score = 181 bits (200), Expect = 3e-43 Identities = 138/163 (85%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 7 AGTTGCCGCCGATGATGGCGACAAACGCCATGATGATGCCGATCAGGCTCAACACATCCA 66 |||||||||||| || ||||| ||||||| |||| |||||||||||||| |||||||| Sbjct 315 AGTTGCCGCCGAGAATCGCGACGAACGCCAGAATGACGCCGATCAGGCTCAGCACATCCA 374 Query 67 TTAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGATGGCGTCGGC 126 | ||||||||||||| |||||||| ||||| || || ||| |||| || ||||| Sbjct 375 TCAGAGGCAGGCCTCGACCAGATGGCGACCGATATCATCAAGGGGATAGACCGCATCGGC 434 Query 127 CAGGTCAGCCTTGACGATGGCCATGGGCATGCCATAGATCACG 169 ||||| |||||||||||||||||||||||||||||||||||| Sbjct 435 CAGGTTGGCCTTGACGATGGCCATGGGCATGCCATAGATCACG 477 >seq186571 Length=3122 Score = 179 bits (198), Expect = 1e-42 Identities = 140/167 (84%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 3 AGGTAGTTGCCGCCGATGATGGCGACAAACGCCATGATGATGCCGATCAGGCTCAACACA 62 ||||| |||||||| | || ||||| ||||||| |||| |||||||||||||| |||| Sbjct 2956 AGGTAATTGCCGCCAAGAATCGCGACGAACGCCAGAATGACGCCGATCAGGCTCAGCACA 3015 Query 63 TCCATTAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGATGGCGT 122 ||||| ||||||||||||| |||||||| ||||| || || ||| |||| || | Sbjct 3016 TCCATCAGAGGCAGGCCTCGACCAGATGGCGACCGATATCATCGAGGGGATAGACCGCAT 3075 Query 123 CGGCCAGGTCAGCCTTGACGATGGCCATGGGCATGCCATAGATCACG 169 ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 3076 CGGCCAGGTTGGCCTTGACGATGGCCATGGGCATGCCATAGATCACG 3122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1422881431392