Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001603.1
Length=479
Score E
Sequences producing significant alignments: (Bits) Value
seq520379 358 2e-96
seq360256 264 3e-68
seq288473 237 4e-60
seq357491 181 3e-43
seq186571 179 1e-42
>seq520379
Length=682
Score = 358 bits (396), Expect = 2e-96
Identities = 319/405 (79%), Gaps = 21/405 (5%)
Strand=Plus/Minus
Query 74 CAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGATGGCGTCGGCCAGGTCA 133
|||||||| ||| || |||||||||||||||||| ||||||||||||||||| |
Sbjct 496 CAGGCCTCGGTCAGGTGTCTGCCGATGTCGTCCAGGCCATAGATGGCGTCGGCCAGATTG 437
Query 134 GCCTTGACGATGGCCATGGGCATGCCATAGATCACGCAGCTGGCTTCGTCCTGGGCCCAG 193
|||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 436 GCCTTGGCGATGGCCATGGGCATGCCGTAGATGACGCAACTGGCTTCGTCCTGGGCCCAC 377
Query 194 ATCACACTGCCGCCCTGCTTGAGCAGGCGCGCGCCTTCACGGCCGTCGGCGCCCATGCTC 253
| | || ||| ||||||||||| || |||||||| ||||||||||||||||||| |
Sbjct 376 ACCTGGCTACCGGACTGCTTGAGCATCCGGGCGCCTTCGCGGCCGTCGGCGCCCATGC-C 318
Query 254 GGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTTGGCGGCCGAACCGAAGGTGAT 313
||| |||||||||||||| || |||||| | |||| |||||| || || || ||||| |
Sbjct 317 GGTCAGGACCACCGCCAGCACCTTGTCGGCATAGGCCTTGGCCGCGGAGCCAAAGGTCAC 258
Query 314 GTCCACGCACGGCTTGTAGTTCAGGCGTTCATCCCCCGGCAGGATTTTGATCGCGCCACG 373
||| ||||| ||||||||||| | || ||| ||
Sbjct 257 GTCGACGCAGGGCTTGTAGTT-----------------GNNNNNNNNNNAT---GCCGCG 218
Query 374 GCCATCCACCATCATCTGCTTGCCACCCGGGGCCAGCAGCGCCAGGCCAGGGCGCAGGAT 433
||| || ||||||||||||||||||||||| |||||||| |||||||| || |||||
Sbjct 217 GCCGTCGACCATCATCTGCTTGCCACCCGGTGCCAGCAGGGCCAGGCCCGGACGCAGCTG 158
Query 434 GTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGATTGTC 478
||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 157 GTCACCGTCCTCGGCTTCCTTGACGCTGATGCGGCAAAGCTTGTC 113
>seq360256
Length=477
Score = 264 bits (292), Expect = 3e-68
Identities = 204/241 (85%), Gaps = 1/241 (0%)
Strand=Plus/Minus
Query 238 GTCGGCGCCCATGCTCGGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTTGGCGG 297
|||||||||||||| |||| || ||||| ||||| || |||||| ||| |||||||| |
Sbjct 477 GTCGGCGCCCATGC-CGGTCAGCACCACGGCCAGCACCTTGTCGTTGTACGACTTGGCCG 419
Query 298 CCGAACCGAAGGTGATGTCCACGCACGGCTTGTAGTTCAGGCGTTCATCCCCCGGCAGGA 357
|||| |||||||||||||||||||| ||||||||||||||||| || || || |||||||
Sbjct 418 CCGATCCGAAGGTGATGTCCACGCAGGGCTTGTAGTTCAGGCGCTCGTCACCGGGCAGGA 359
Query 358 TTTTGATCGCGCCACGGCCATCCACCATCATCTGCTTGCCACCCGGGGCCAGCAGCGCCA 417
| || | ||||||||| || | ||||||||||||||| ||||| ||||| | ||||
Sbjct 358 TGCGAATGGTGCCACGGCCGTCGATCATCATCTGCTTGCCGCCCGGTGCCAGGATGGCCA 299
Query 418 GGCCAGGGCGCAGGATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGATTGT 477
|||| |||||||||||||||||||||||||||||||||||| |||| ||| || ||||
Sbjct 298 GGCCGGGGCGCAGGATGTCGCCATCCTCGGCTTCCTTGACGTTGATCTTGCAGAGCTTGT 239
Query 478 C 478
|
Sbjct 238 C 238
>seq288473
Length=226
Score = 237 bits (262), Expect = 4e-60
Identities = 189/226 (84%), Gaps = 1/226 (0%)
Strand=Plus/Minus
Query 238 GTCGGCGCCCATGCTCGGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTTGGCGG 297
|||||||||||||| |||| || ||||| ||||| || |||||| ||| |||||||| |
Sbjct 226 GTCGGCGCCCATGC-CGGTCAGCACCACGGCCAGCACCTTGTCGTTGTACGACTTGGCCG 168
Query 298 CCGAACCGAAGGTGATGTCCACGCACGGCTTGTAGTTCAGGCGTTCATCCCCCGGCAGGA 357
||||||||||||||||||||||||| |||||||| || || || || || || |||||||
Sbjct 167 CCGAACCGAAGGTGATGTCCACGCAGGGCTTGTAATTGAGCCGCTCGTCACCGGGCAGGA 108
Query 358 TTTTGATCGCGCCACGGCCATCCACCATCATCTGCTTGCCACCCGGGGCCAGCAGCGCCA 417
| ||| | ||| ||||| || | ||||||||||||||| ||||| ||||| | ||||
Sbjct 107 TGCGGATGGTGCCGCGGCCGTCGATCATCATCTGCTTGCCGCCCGGCGCCAGAATGGCCA 48
Query 418 GGCCAGGGCGCAGGATGTCGCCATCCTCGGCTTCCTTGACGCTGAT 463
| || ||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 47 GCCCGGGGCGCAGGATATCGCCGTCCTCGGCTTCCTTGACGTTGAT 2
>seq357491
Length=477
Score = 181 bits (200), Expect = 3e-43
Identities = 138/163 (85%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 7 AGTTGCCGCCGATGATGGCGACAAACGCCATGATGATGCCGATCAGGCTCAACACATCCA 66
|||||||||||| || ||||| ||||||| |||| |||||||||||||| ||||||||
Sbjct 315 AGTTGCCGCCGAGAATCGCGACGAACGCCAGAATGACGCCGATCAGGCTCAGCACATCCA 374
Query 67 TTAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGATGGCGTCGGC 126
| ||||||||||||| |||||||| ||||| || || ||| |||| || |||||
Sbjct 375 TCAGAGGCAGGCCTCGACCAGATGGCGACCGATATCATCAAGGGGATAGACCGCATCGGC 434
Query 127 CAGGTCAGCCTTGACGATGGCCATGGGCATGCCATAGATCACG 169
||||| ||||||||||||||||||||||||||||||||||||
Sbjct 435 CAGGTTGGCCTTGACGATGGCCATGGGCATGCCATAGATCACG 477
>seq186571
Length=3122
Score = 179 bits (198), Expect = 1e-42
Identities = 140/167 (84%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 3 AGGTAGTTGCCGCCGATGATGGCGACAAACGCCATGATGATGCCGATCAGGCTCAACACA 62
||||| |||||||| | || ||||| ||||||| |||| |||||||||||||| ||||
Sbjct 2956 AGGTAATTGCCGCCAAGAATCGCGACGAACGCCAGAATGACGCCGATCAGGCTCAGCACA 3015
Query 63 TCCATTAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGATGGCGT 122
||||| ||||||||||||| |||||||| ||||| || || ||| |||| || |
Sbjct 3016 TCCATCAGAGGCAGGCCTCGACCAGATGGCGACCGATATCATCGAGGGGATAGACCGCAT 3075
Query 123 CGGCCAGGTCAGCCTTGACGATGGCCATGGGCATGCCATAGATCACG 169
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3076 CGGCCAGGTTGGCCTTGACGATGGCCATGGGCATGCCATAGATCACG 3122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1422881431392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |