Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq226614 172 6e-41 seq458102 138 1e-30 seq473804 134 2e-29 seq237230 102 1e-19 seq263020 100 3e-19 seq301146 93.3 5e-17 seq15692 87.8 2e-15 seq309229 84.2 3e-14 >seq226614 Length=493 Score = 172 bits (190), Expect = 6e-41 Identities = 157/193 (81%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 289 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 348 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||| ||||||||||||||||| | || Sbjct 349 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCAACA 408 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGC 182 | ||| |||| ||||| || || ||| ||| ||| | || |||||| ||| Sbjct 409 CGCCCAGTGAAGGGCAT-GAGGTTCCCCAGAAGGAAAGGCCCGGCCGGACCAGTACACGC 467 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 468 GGTGAGGCGGACC 480 >seq458102 Length=237 Score = 138 bits (152), Expect = 1e-30 Identities = 93/104 (89%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60 |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| || Sbjct 134 CGTCTCTAGAAACCAACAAAATAGAAACGCACGCCCTATTTTATTATTCCATGCTAACGT 193 Query 61 ATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGT 104 ||||| || | |||||||||||||||||||||||| |||| || Sbjct 194 ATTCGAGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGT 237 >seq473804 Length=1692 Score = 134 bits (148), Expect = 2e-29 Identities = 149/194 (77%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||| ||||| | | |||||||||||| |||||||||||||||| |||||| Sbjct 1556 CTAGAAACCAACGAAATAAGACCACACGTCCTATTCCATTATTCCATGCTAATCTATTCG 1497 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||| | || |||||||||||| ||| ||||| |||||| |||| | || Sbjct 1496 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCACAGTAAACGTCCTGTTTCCCCGACA 1437 Query 126 -CACCAATGAA-GGCATACGGGCTCACCAAGAGGT--AGGGCTGGGTAATGCAGTACTCG 181 | ||| |||| || || | || || || |||| ||| | || | |||| | || Sbjct 1436 CCCCCAGTGAAGGGGATGC-GGTTCCGCAGAAGGTGAAGGCCCGGCCGAACCAGTGCACG 1378 Query 182 CCGTGAGGCGGACC 195 | |||||||||||| Sbjct 1377 CGGTGAGGCGGACC 1364 >seq237230 Length=330 Score = 102 bits (112), Expect = 1e-19 Identities = 119/157 (76%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 42 TATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAA 101 |||||||||||||||||||||||| || || |||||| | || |||||||||||| |||| Sbjct 173 TATTATTCCATGCTAATGTATTCGAGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAA 114 Query 102 GGTAAAAGTCCTGGTTCCTCCGCAC-ACCAATGAAGGCATACGGGCT--CACCAAGAGGT 158 ||||| |||||| |||| | ||| ||| |||||| || ||| | ||| || | Sbjct 113 AGTAAATGTCCTGTTTCCCCGCCACGCCCAGTGAAGG-GTATGGGGTTCCACAGAGGGAA 55 Query 159 AGGGCTGGGTAATGCAGTACTCGCCGTGAGGCGGACC 195 ||| | || |||| | ||| |||||||||||| Sbjct 54 AGGCCCGGCCGGACCAGTGCACGCGGTGAGGCGGACC 18 >seq263020 Length=843 Score = 100 bits (110), Expect = 3e-19 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 45 TATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGT 104 ||||||||||||||||||||| || || |||||| | || |||||||||||| |||| || Sbjct 1 TATTCCATGCTAATGTATTCGAGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGT 60 Query 105 AAAAGTCCTGGTTCCTCCGCAC-ACCAATGAAGG 137 |||||||||| |||| || ||| ||| |||||| Sbjct 61 AAAAGTCCTGCTTCC-CCCCACGCCCAGTGAAGG 93 >seq301146 Length=1132 Score = 93.3 bits (102), Expect = 5e-17 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 56 AATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 ||||||||| |||||| |||||||||||||||||||||||||||||||||||| || | | Sbjct 1 AATGTATTCCGGCGTAGGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAATTCATAG 60 Query 116 TTCC 119 |||| Sbjct 61 TTCC 64 >seq15692 Length=234 Score = 87.8 bits (96), Expect = 2e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 47 TTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 |||||||||||||||||| ||| | ||||||||| |||||||||||||| |||| |||| Sbjct 1 TTCCATGCTAATGTATTCAAGCGAAGGCCTGCTTTAAACACTCTAATTTTTTCAAAGTAA 60 Query 107 AAGTCCTGGTT 117 | ||||| ||| Sbjct 61 ACGTCCTAGTT 71 >seq309229 Length=7968 Score = 84.2 bits (92), Expect = 3e-14 Identities = 84/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||||||| | | ||| ||| Sbjct 2254 AAACCAACAAAATAGAACCGAA-GTCCTATTCCATTATTCCATGCAAGAATTTTCAGGCA 2196 Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTG 114 || ||||||||||| ||||| ||||| |||| ||||| || ||| Sbjct 2195 CAAAGGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAACGTGCTG 2149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592169234718