Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq226614 172 6e-41
seq458102 138 1e-30
seq473804 134 2e-29
seq237230 102 1e-19
seq263020 100 3e-19
seq301146 93.3 5e-17
seq15692 87.8 2e-15
seq309229 84.2 3e-14
>seq226614
Length=493
Score = 172 bits (190), Expect = 6e-41
Identities = 157/193 (81%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 289 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 348
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| | |||||||||||||||||||||||| |||| ||||||||||||||||| | ||
Sbjct 349 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCAACA 408
Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGC 182
| ||| |||| ||||| || || ||| ||| ||| | || |||||| |||
Sbjct 409 CGCCCAGTGAAGGGCAT-GAGGTTCCCCAGAAGGAAAGGCCCGGCCGGACCAGTACACGC 467
Query 183 CGTGAGGCGGACC 195
||||||||||||
Sbjct 468 GGTGAGGCGGACC 480
>seq458102
Length=237
Score = 138 bits (152), Expect = 1e-30
Identities = 93/104 (89%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60
|||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||
Sbjct 134 CGTCTCTAGAAACCAACAAAATAGAAACGCACGCCCTATTTTATTATTCCATGCTAACGT 193
Query 61 ATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGT 104
||||| || | |||||||||||||||||||||||| |||| ||
Sbjct 194 ATTCGAGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGT 237
>seq473804
Length=1692
Score = 134 bits (148), Expect = 2e-29
Identities = 149/194 (77%), Gaps = 5/194 (3%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
|||||||||||| ||||| | | |||||||||||| |||||||||||||||| ||||||
Sbjct 1556 CTAGAAACCAACGAAATAAGACCACACGTCCTATTCCATTATTCCATGCTAATCTATTCG 1497
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || |||||| | || |||||||||||| ||| ||||| |||||| |||| | ||
Sbjct 1496 AGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCACAGTAAACGTCCTGTTTCCCCGACA 1437
Query 126 -CACCAATGAA-GGCATACGGGCTCACCAAGAGGT--AGGGCTGGGTAATGCAGTACTCG 181
| ||| |||| || || | || || || |||| ||| | || | |||| | ||
Sbjct 1436 CCCCCAGTGAAGGGGATGC-GGTTCCGCAGAAGGTGAAGGCCCGGCCGAACCAGTGCACG 1378
Query 182 CCGTGAGGCGGACC 195
| ||||||||||||
Sbjct 1377 CGGTGAGGCGGACC 1364
>seq237230
Length=330
Score = 102 bits (112), Expect = 1e-19
Identities = 119/157 (76%), Gaps = 4/157 (3%)
Strand=Plus/Minus
Query 42 TATTATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAA 101
|||||||||||||||||||||||| || || |||||| | || |||||||||||| ||||
Sbjct 173 TATTATTCCATGCTAATGTATTCGAGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAA 114
Query 102 GGTAAAAGTCCTGGTTCCTCCGCAC-ACCAATGAAGGCATACGGGCT--CACCAAGAGGT 158
||||| |||||| |||| | ||| ||| |||||| || ||| | ||| || |
Sbjct 113 AGTAAATGTCCTGTTTCCCCGCCACGCCCAGTGAAGG-GTATGGGGTTCCACAGAGGGAA 55
Query 159 AGGGCTGGGTAATGCAGTACTCGCCGTGAGGCGGACC 195
||| | || |||| | ||| ||||||||||||
Sbjct 54 AGGCCCGGCCGGACCAGTGCACGCGGTGAGGCGGACC 18
>seq263020
Length=843
Score = 100 bits (110), Expect = 3e-19
Identities = 80/94 (85%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 45 TATTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGT 104
||||||||||||||||||||| || || |||||| | || |||||||||||| |||| ||
Sbjct 1 TATTCCATGCTAATGTATTCGAGCATAGGCCTGCCTGGAGCACTCTAATTTTTTCAAAGT 60
Query 105 AAAAGTCCTGGTTCCTCCGCAC-ACCAATGAAGG 137
|||||||||| |||| || ||| ||| ||||||
Sbjct 61 AAAAGTCCTGCTTCC-CCCCACGCCCAGTGAAGG 93
>seq301146
Length=1132
Score = 93.3 bits (102), Expect = 5e-17
Identities = 59/64 (92%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 56 AATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115
||||||||| |||||| |||||||||||||||||||||||||||||||||||| || | |
Sbjct 1 AATGTATTCCGGCGTAGGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAATTCATAG 60
Query 116 TTCC 119
||||
Sbjct 61 TTCC 64
>seq15692
Length=234
Score = 87.8 bits (96), Expect = 2e-15
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 47 TTCCATGCTAATGTATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106
|||||||||||||||||| ||| | ||||||||| |||||||||||||| |||| ||||
Sbjct 1 TTCCATGCTAATGTATTCAAGCGAAGGCCTGCTTTAAACACTCTAATTTTTTCAAAGTAA 60
Query 107 AAGTCCTGGTT 117
| ||||| |||
Sbjct 61 ACGTCCTAGTT 71
>seq309229
Length=7968
Score = 84.2 bits (92), Expect = 3e-14
Identities = 84/107 (79%), Gaps = 3/107 (3%)
Strand=Plus/Minus
Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69
||||||||||||||| || | ||||||||| |||||||||||| | | ||| |||
Sbjct 2254 AAACCAACAAAATAGAACCGAA-GTCCTATTCCATTATTCCATGCAAGAATTTTCAGGCA 2196
Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTG 114
|| ||||||||||| ||||| ||||| |||| ||||| || |||
Sbjct 2195 CAAAGGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAACGTGCTG 2149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592169234718
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |