Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001671.1 Length=306 Score E Sequences producing significant alignments: (Bits) Value seq377977 87.8 3e-15 seq393481 75.2 2e-11 >seq377977 Length=283 Score = 87.8 bits (96), Expect = 3e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 53 GAGCTCTATGGCTCGTTGGGCGCCACTGGCAAAGGCCACGGCAGCGACAAGGCCATGTTG 112 ||||| || ||||| ||||||||||| ||||| |||||||||||||||||||| || || Sbjct 201 GAGCTGTACGGCTCCTTGGGCGCCACCGGCAAGGGCCACGGCAGCGACAAGGCGGTGCTG 142 Query 113 CTGGGCCT 120 |||||||| Sbjct 141 CTGGGCCT 134 >seq393481 Length=1909 Score = 75.2 bits (82), Expect = 2e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 53 GAGCTCTATGGCTCGTTGGGCGCCACTGGCAAAGGCCACGGCAGCGACAAGGCCATGTTG 112 ||||| || ||||| |||||||||| ||||| ||||| |||||||||||||| || || Sbjct 236 GAGCTGTACGGCTCCCTGGGCGCCACCGGCAAGGGCCATGGCAGCGACAAGGCGGTGCTG 295 Query 113 CTGGGCCTGGAAGGCGAACACCCCGACACCGTGAAT 148 ||||| || ||| | | || || |||||| || Sbjct 296 CTGGGGCTCAGCGGCCATGAACCGGATACCGTGGAT 331 Score = 73.4 bits (80), Expect = 7e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 53 GAGCTCTATGGCTCGTTGGGCGCCACTGGCAAAGGCCACGGCAGCGACAAGGCCATGTTG 112 ||||| || ||||| |||||||||| ||||| ||||| |||||||||||||| || || Sbjct 104 GAGCTGTACGGCTCCCTGGGCGCCACCGGCAAGGGCCATGGCAGCGACAAGGCGGTGCTG 163 Query 113 CTGGG 117 ||||| Sbjct 164 CTGGG 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 872191302464