Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001674.1 Length=313 Score E Sequences producing significant alignments: (Bits) Value seq237018 264 2e-68 seq268655 230 4e-58 seq397197 224 2e-56 seq418191 210 4e-52 seq84096 100 5e-19 >seq237018 Length=2661 Score = 264 bits (292), Expect = 2e-68 Identities = 238/299 (80%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 8 GATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCTGGCCGT 67 || ||| || ||||||||||||| || ||||||||||| ||| || || || || || Sbjct 1091 GACCACGTGGTGGAAATCGCCGTCGACGACGAAGAGATCGTCGGTCGCATCGCCGGTCGC 1150 Query 68 CGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCA 127 ||||| || | ||||| || ||||||||||||| |||| ||||| ||||| || Sbjct 1151 CGCGTGCATCCGGGTTCGGGGCGTGTGTACCACACCGAGCACAACCCGCCGAAGGTGGCT 1210 Query 128 GGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAAACC 187 ||||||||||| | ||||||||||||||| | |||||| | || |||| |||| ||| Sbjct 1211 GGCAAGGACGACGAAACCGGCGAAGACCTGATCCAGCGCGAAGATGACAAGGAAGCCACC 1270 Query 188 GTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAG 247 || || || |||||||| || ||||| || || ||||||||||||||||||||||||||| Sbjct 1271 GTGCGCCATCGCCTGTCGGTCTACCACTCTCAGACCAAGCCGCTGGTGGACTTCTACCAG 1330 Query 248 AAGCTGGCTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGT 306 |||||| | |||||| | |||| ||| ||||||||| | | |||||||| |||||||| Sbjct 1331 AAGCTGTCGGCTGCCGAAGGCACGCCGAAGTACAGCGCCATCGAAGGCGTCGGCTCGGT 1389 >seq268655 Length=332 Score = 230 bits (254), Expect = 4e-58 Identities = 225/290 (78%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 8 GATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCTGGCCGT 67 || ||| || |||||||||||||||| ||||||||||| ||| || || || || || Sbjct 41 GACCACGTGGTGGAAATCGCCGTTGACGACGAAGAGATCGTCGGTCGCATCGCCGGTCGC 100 Query 68 CGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCA 127 ||||| || | ||||||||||| |||||||||| |||| || || ||||| || Sbjct 101 CGCGTGCACCCGGGTTCGGGCCGCGTCTACCACACCGAGCACAACCCACCGAAGGTCGCC 160 Query 128 GGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAAACC 187 |||||||| || | ||||| || || ||| | |||||| | ||||||| |||| ||| Sbjct 161 GGCAAGGATGACGAAACCGGTGAGGAGCTGATCCAGCGCGAAGACGACAAGGAAGCCACC 220 Query 188 GTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAG 247 || ||||| || ||||| || || || ||||| ||||||||||||||||| ||||||||| Sbjct 221 GTGCGTCATCGTCTGTCGGTCTATCACTCGCAGACCAAGCCGCTGGTGGATTTCTACCAG 280 Query 248 AAGCTGGCTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGT 297 |||||| | || || | |||| ||| ||||||||| | | |||||||| Sbjct 281 AAGCTGTCGGCCGCTGAAGGCACGCCGAAGTACAGCGCCATCGAAGGCGT 330 >seq397197 Length=889 Score = 224 bits (248), Expect = 2e-56 Identities = 229/299 (77%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 8 GATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCTGGCCGT 67 || ||| |||||||||||||||| || |||||||| || |||||||| | | || || Sbjct 551 GACCACGTGCTGGAAATCGCCGTGGATGACGAAGAAATCGTCCAGCGCCTGTCCGGTCGC 610 Query 68 CGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCA 127 ||||| || | ||||| ||||| || |||| || |||||||||| ||||| || Sbjct 611 CGCGTGCACCCGGGTTCGGGTCGCGTCTATCACATCGAGCACAATCCGCCGAAGGTCGCC 670 Query 128 GGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAAACC 187 | || ||||| |||||||||| |||||||||||| | |||||| ||||| ||| Sbjct 671 GACACCGACGACCTGACCGGCGAGCCGCTGGTACAGCGCGAAGACGACCGCGAAGCCACC 730 Query 188 GTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAG 247 |||| | || ||| | || ||||| || ||||||||||||||||||||||||||| Sbjct 731 ATTCGCAAGCGTCTGGACCTCTATCATTCCCAGACCAAGCCGCTGGTGGACTTCTACCAG 790 Query 248 AAGCTGGCTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGT 306 ||||||| || |||||||||| ||| |||| ||||| | | || ||||| || ||||| Sbjct 791 AAGCTGGGCGCCGCCCAGGGCACGCCGAAGTGCAGCCGCATCGAGGGCGTGGGTTCGGT 849 >seq418191 Length=2456 Score = 210 bits (232), Expect = 4e-52 Identities = 176/216 (81%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 91 CGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCAGGCAAGGACGATGTGACCGGCGA 150 |||||||||||||| |||| ||||| ||||| || ||||||||||| | ||||| || Sbjct 1 CGTGTACCACACCGAGCACAACCCGCCGAAGGTCGCCGGCAAGGACGACGAAACCGGTGA 60 Query 151 AGACCTGGTACAGCGCAAGGACGACACCGAAGAAACCGTTCGTCACCGCCTGTCTGTTTA 210 ||| ||| | ||||| | ||||||| |||| ||||| || || |||||||| || || Sbjct 61 AGAGCTGATCCAGCGTGAAGACGACAAGGAAGCCACCGTGCGCCATCGCCTGTCGGTCTA 120 Query 211 CCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAGAAGCTGGCTGCTGCCCAGGGCAA 270 ||| ||||| ||||||||||||||||| ||||||||||||||| | || ||| |||||| Sbjct 121 CCACTCGCAGACCAAGCCGCTGGTGGATTTCTACCAGAAGCTGTCGGCCGCCGAGGGCAC 180 Query 271 GCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGT 306 ||| ||||||||| | | |||||||| |||||||| Sbjct 181 GCCGAAGTACAGCGCCATCGAAGGCGTCGGCTCGGT 216 >seq84096 Length=8070 Score = 100 bits (110), Expect = 5e-19 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 8 GATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCTGGCCGT 67 |||||| ||||||| |||| || |||||| ||| ||| | ||||| | || ||| Sbjct 7745 GATCACGTGCTGGAGTTCGCTGTACCGGACGAACTGATCGTCGAACGTATCGTGGGTCGT 7686 Query 68 CGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCA 127 ||||| || | | || |||||||| || ||| | || |||||| || || || | | Sbjct 7685 CGCGTGCATGCGCCGTCAGGCCGCGTCTATCACGTCACCTTCAATCCACCGAAAGTGGAA 7626 Query 128 GGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAAACC 187 ||||| || ||||||||||| ||||| || |||||| ||||| ||||| ||| Sbjct 7625 GGCAAAGATGATGTGACCGGTGAAGAGCTCACCACGCGCAAAGACGATCAGGAAGAGACC 7566 Query 188 GTTCGTCACCGCCTG 202 || ||| | || ||| Sbjct 7565 GTGCGTAAGCGTCTG 7551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 894473562016