Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001674.1
Length=313
Score E
Sequences producing significant alignments: (Bits) Value
seq237018 264 2e-68
seq268655 230 4e-58
seq397197 224 2e-56
seq418191 210 4e-52
seq84096 100 5e-19
>seq237018
Length=2661
Score = 264 bits (292), Expect = 2e-68
Identities = 238/299 (80%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 8 GATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCTGGCCGT 67
|| ||| || ||||||||||||| || ||||||||||| ||| || || || || ||
Sbjct 1091 GACCACGTGGTGGAAATCGCCGTCGACGACGAAGAGATCGTCGGTCGCATCGCCGGTCGC 1150
Query 68 CGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCA 127
||||| || | ||||| || ||||||||||||| |||| ||||| ||||| ||
Sbjct 1151 CGCGTGCATCCGGGTTCGGGGCGTGTGTACCACACCGAGCACAACCCGCCGAAGGTGGCT 1210
Query 128 GGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAAACC 187
||||||||||| | ||||||||||||||| | |||||| | || |||| |||| |||
Sbjct 1211 GGCAAGGACGACGAAACCGGCGAAGACCTGATCCAGCGCGAAGATGACAAGGAAGCCACC 1270
Query 188 GTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAG 247
|| || || |||||||| || ||||| || || |||||||||||||||||||||||||||
Sbjct 1271 GTGCGCCATCGCCTGTCGGTCTACCACTCTCAGACCAAGCCGCTGGTGGACTTCTACCAG 1330
Query 248 AAGCTGGCTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGT 306
|||||| | |||||| | |||| ||| ||||||||| | | |||||||| ||||||||
Sbjct 1331 AAGCTGTCGGCTGCCGAAGGCACGCCGAAGTACAGCGCCATCGAAGGCGTCGGCTCGGT 1389
>seq268655
Length=332
Score = 230 bits (254), Expect = 4e-58
Identities = 225/290 (78%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 8 GATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCTGGCCGT 67
|| ||| || |||||||||||||||| ||||||||||| ||| || || || || ||
Sbjct 41 GACCACGTGGTGGAAATCGCCGTTGACGACGAAGAGATCGTCGGTCGCATCGCCGGTCGC 100
Query 68 CGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCA 127
||||| || | ||||||||||| |||||||||| |||| || || ||||| ||
Sbjct 101 CGCGTGCACCCGGGTTCGGGCCGCGTCTACCACACCGAGCACAACCCACCGAAGGTCGCC 160
Query 128 GGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAAACC 187
|||||||| || | ||||| || || ||| | |||||| | ||||||| |||| |||
Sbjct 161 GGCAAGGATGACGAAACCGGTGAGGAGCTGATCCAGCGCGAAGACGACAAGGAAGCCACC 220
Query 188 GTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAG 247
|| ||||| || ||||| || || || ||||| ||||||||||||||||| |||||||||
Sbjct 221 GTGCGTCATCGTCTGTCGGTCTATCACTCGCAGACCAAGCCGCTGGTGGATTTCTACCAG 280
Query 248 AAGCTGGCTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGT 297
|||||| | || || | |||| ||| ||||||||| | | ||||||||
Sbjct 281 AAGCTGTCGGCCGCTGAAGGCACGCCGAAGTACAGCGCCATCGAAGGCGT 330
>seq397197
Length=889
Score = 224 bits (248), Expect = 2e-56
Identities = 229/299 (77%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 8 GATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCTGGCCGT 67
|| ||| |||||||||||||||| || |||||||| || |||||||| | | || ||
Sbjct 551 GACCACGTGCTGGAAATCGCCGTGGATGACGAAGAAATCGTCCAGCGCCTGTCCGGTCGC 610
Query 68 CGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCA 127
||||| || | ||||| ||||| || |||| || |||||||||| ||||| ||
Sbjct 611 CGCGTGCACCCGGGTTCGGGTCGCGTCTATCACATCGAGCACAATCCGCCGAAGGTCGCC 670
Query 128 GGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAAACC 187
| || ||||| |||||||||| |||||||||||| | |||||| ||||| |||
Sbjct 671 GACACCGACGACCTGACCGGCGAGCCGCTGGTACAGCGCGAAGACGACCGCGAAGCCACC 730
Query 188 GTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAG 247
|||| | || ||| | || ||||| || |||||||||||||||||||||||||||
Sbjct 731 ATTCGCAAGCGTCTGGACCTCTATCATTCCCAGACCAAGCCGCTGGTGGACTTCTACCAG 790
Query 248 AAGCTGGCTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGT 306
||||||| || |||||||||| ||| |||| ||||| | | || ||||| || |||||
Sbjct 791 AAGCTGGGCGCCGCCCAGGGCACGCCGAAGTGCAGCCGCATCGAGGGCGTGGGTTCGGT 849
>seq418191
Length=2456
Score = 210 bits (232), Expect = 4e-52
Identities = 176/216 (81%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 91 CGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCAGGCAAGGACGATGTGACCGGCGA 150
|||||||||||||| |||| ||||| ||||| || ||||||||||| | ||||| ||
Sbjct 1 CGTGTACCACACCGAGCACAACCCGCCGAAGGTCGCCGGCAAGGACGACGAAACCGGTGA 60
Query 151 AGACCTGGTACAGCGCAAGGACGACACCGAAGAAACCGTTCGTCACCGCCTGTCTGTTTA 210
||| ||| | ||||| | ||||||| |||| ||||| || || |||||||| || ||
Sbjct 61 AGAGCTGATCCAGCGTGAAGACGACAAGGAAGCCACCGTGCGCCATCGCCTGTCGGTCTA 120
Query 211 CCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAGAAGCTGGCTGCTGCCCAGGGCAA 270
||| ||||| ||||||||||||||||| ||||||||||||||| | || ||| ||||||
Sbjct 121 CCACTCGCAGACCAAGCCGCTGGTGGATTTCTACCAGAAGCTGTCGGCCGCCGAGGGCAC 180
Query 271 GCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGT 306
||| ||||||||| | | |||||||| ||||||||
Sbjct 181 GCCGAAGTACAGCGCCATCGAAGGCGTCGGCTCGGT 216
>seq84096
Length=8070
Score = 100 bits (110), Expect = 5e-19
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 8 GATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCTGGCCGT 67
|||||| ||||||| |||| || |||||| ||| ||| | ||||| | || |||
Sbjct 7745 GATCACGTGCTGGAGTTCGCTGTACCGGACGAACTGATCGTCGAACGTATCGTGGGTCGT 7686
Query 68 CGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCA 127
||||| || | | || |||||||| || ||| | || |||||| || || || | |
Sbjct 7685 CGCGTGCATGCGCCGTCAGGCCGCGTCTATCACGTCACCTTCAATCCACCGAAAGTGGAA 7626
Query 128 GGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAAACC 187
||||| || ||||||||||| ||||| || |||||| ||||| ||||| |||
Sbjct 7625 GGCAAAGATGATGTGACCGGTGAAGAGCTCACCACGCGCAAAGACGATCAGGAAGAGACC 7566
Query 188 GTTCGTCACCGCCTG 202
|| ||| | || |||
Sbjct 7565 GTGCGTAAGCGTCTG 7551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 894473562016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |