Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq122112 354 2e-95 seq309139 170 4e-40 seq322074 145 2e-32 seq300713 136 9e-30 seq170390 120 7e-25 seq138017 104 5e-20 seq184814 87.8 4e-15 seq28742 86.0 1e-14 seq468370 75.2 3e-11 seq375573 73.4 9e-11 >seq122112 Length=2461 Score = 354 bits (392), Expect = 2e-95 Identities = 315/394 (80%), Gaps = 0/394 (0%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||||||||| |||||||||||||||||||| ||||| || || ||||| |||| | Sbjct 222 CGATGGTCAGCAATTCGCCGCCCACCTGGGTCCAGGCCAGCCCGGTCACCTGGCCGATCT 281 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 |||||||||| ||||| || || |||| | ||||||||||| ||||| | ||| || | Sbjct 282 GATCCTGCTGTTCGGCGAGACCATAGCGGTGCTTGCGCACGCCCAGGAAATCCTCGAGCG 341 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180 ||||||| |||||| || ||||||||||||| || || | ||| ||||| | Sbjct 342 AGTCGGCGGTGACCACGACATGGAAGCGTTTTTCCTTGGCGTGCTTCTTCACCGCACGCC 401 Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240 |||| | ||| |||||||| ||||| |||| || || || || || || |||||||| | Sbjct 402 GGCAAACCTTGGCGATCTGCCGCTCGAGGCTGCGTACGCCCGCCTCACGCGTGTAGTAAC 461 Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300 | | |||||| ||||||| | | || ||||| | |||| |||||||| || |||| Sbjct 462 GAATGATGTCACGGATCGCCGCTTCCTCGAATTCCAGCTCGGTCTTCTTCAAACCGTTGG 521 Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360 || ||||||||| ||||||||||| ||| ||||||| |||| ||||||||||||||||| Sbjct 522 CCTGAATCTGCTTTGGCGCGAGGTATTTGGTGGCGATATTGACCTTCTCGTCTTCGGTGT 581 Query 361 AACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 | ||||||||||||||||||||||| |||||||| Sbjct 582 AGCCCGGCAGGCGAATCACTTCCATGCGGTCCAG 615 >seq309139 Length=6796 Score = 170 bits (188), Expect = 4e-40 Identities = 285/406 (70%), Gaps = 21/406 (5%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| ||||||||||| | |||||||||||| || || ||||||||||| Sbjct 4791 CGATGGTCAGCAGATCGCCGCCCACTTCGGTCCACGCCAGTCCGGTCACCTGACCGACAC 4732 Query 61 GATCCT-GCTGCTCGGCCAGGCCGTAGCTGAATTTGCGC---ACGCCGAGGAAGTGCTCC 116 | | | |||| || || |||| ||| ||| |||| ||||| ||||| | || Sbjct 4731 GGTTTTCGCTG-TCAGCACGGCCATAGTCGAA---GCGCTGAACGCCCAGGAAATCCTTA 4676 Query 117 AGGGAGTCGGCCGTGACCTTCACCGAGAAGCGTTTT-------TCCAGC-GCATGTTCCT 168 ||| ||| | || | || || |||| |||| | ||| || || Sbjct 4675 AGGTTCTCGCCATCGATGGT----GATGTGCTTTTTCGTCTTGTCCATCAGCA-GTGACT 4621 Query 169 TGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGC 228 | ||||| || ||||| | |||| | || ||||| |||| |||||| |||||||||| Sbjct 4620 TCACCGCTTTACGGCACAATTTCGACAGCTCACGCTCAAGGCTACGCACCCCGGCTTCGC 4561 Query 229 GGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCT 288 ||||||||||||| | |||| || ||| | || | |||||| ||||| | | Sbjct 4560 GGGTGTAGTAGCGAATGATGCCGATGATGGCGCTGTCTTCAACCGTAATCTCACTGGCTT 4501 Query 289 TCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCT 348 ||||| | || | ||||||||| ||| || | || | |||||||| | || | Sbjct 4500 TCAGGGCGTTACGCTCAATCTGCTTCGGCAGCAGATGCTGCTTAGCGATGTTCAGTTTTT 4441 Query 349 CGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 | |||||||||||||||| ||| |||||||||||||| ||||| || Sbjct 4440 CATCTTCGGTGTAACCCGACAGACGAATCACTTCCATACGGTCAAG 4395 Score = 77.0 bits (84), Expect = 7e-12 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 305 AATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGTAACC 364 ||||||||| ||| || | || |||| ||||| | || || |||||||||||||| Sbjct 4304 AATCTGCTTCGGCAGCAGATGCTGCTTGGCAATGTTCAGTTTTTCATCTTCGGTGTAACC 4245 Query 365 CGGCAGGCGAATCACTTCCATCCGGTCCAG 394 || ||| |||||||||||||| ||||| || Sbjct 4244 CGACAGACGAATCACTTCCATACGGTCAAG 4215 >seq322074 Length=376 Score = 145 bits (160), Expect = 2e-32 Identities = 250/370 (68%), Gaps = 30/370 (8%) Strand=Plus/Minus Query 8 CAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTTGATCCTG 67 ||||| |||||||| |||| |||||| |||||||| || ||| | |||| | | ||| Sbjct 370 CAGCAGGTCGCCGCCGACCTCGGTCCAGGCCAGGCCGGTCACCAGGCCGATCTCGTTCTG 311 Query 68 CTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGGAGTCGGC 127 || |||||| ||||| || ||| ||||||||| || | | ||| ||| | | Sbjct 310 CTCCTCGGCACGGCCGAAGTCGAAGCGGCGCACGCCCTGGTACTTCTCAAGGTTCTTCTC 251 Query 128 CGTGACCTTCACCGAGAAG----------CGTTTTT--------------------CCAG 157 ||||| ||||| || | || || |||| Sbjct 250 GTTGACCACCACCGCCGAGGACTTCTTGCCCTTCTTGGCAACCGCCTGCGGGCCACCCAG 191 Query 158 CGCATGTTCCTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCAC 217 ||| | ||||| ||| ||||||||||||| |||||||| |||||||||| ||||| Sbjct 190 CGCCAGCTCCTTCACCACCTTGCGGCAGATGCGCGCGATCTCGCGCTCCAGGTTGCGCAC 131 Query 218 ACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGAT 277 |||| ||||| ||||| ||||| |||||||||||||||| ||| | || | | | Sbjct 130 GCCGGACTCGCGCGTGTAATAGCGCACGATGTCGCGGATCGCACCGGCCTCGATCTTCAG 71 Query 278 CTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGAT 337 ||| || ||||||||| |||||| | |||||||||| | ||||| |||||| Sbjct 70 CTCCTCCGGCTTCAGGCCGTTGGCCTTGAGCTGCTTGGGCACCAGGTAGCGCGCGGCGAT 11 Query 338 GTTGATCTTC 347 ||||| |||| Sbjct 10 GTTGAGCTTC 1 >seq300713 Length=350 Score = 136 bits (150), Expect = 9e-30 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192 GCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCG 251 ||||||| |||||| || ||||| || | ||||| ||||||||||| ||||||||| Sbjct 350 GCGATCTCGCGCTCGAGATTGCGCACGCCCGACTCGCGCGTGTAGTAGCGCACGATGTCG 291 Query 252 CGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGC 311 ||||||| | | || | |||| | |||||| ||||||||| | |||| Sbjct 290 CGGATCGCATCCTCGCTAACGGTCAGCTCGGCGGCCTTCAGACCATTGGCCTTGAGCTGC 231 Query 312 TTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGG 371 |||||| ||||| |||||||||||| ||||||||| |||||||||||||| | | Sbjct 230 TTGGGCAGCAGGTAGCGCGTGGCGATGTTGAGCTTCTCGTCCTCGGTGTAACCCGGAATG 171 Query 372 CGAATCACTTCCATCCGGTCCAG 394 || ||||| ||||| ||||| || Sbjct 170 CGGATCACCTCCATGCGGTCGAG 148 >seq170390 Length=1865 Score = 120 bits (132), Expect = 7e-25 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||| | Sbjct 1780 CGATGGTCAGCAGTTCGCCACCCACCTGGGTCCAGGCCAGGCCGGTGACCTGACCGATCT 1839 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAG 86 ||||||||||||||||||| |||||| Sbjct 1840 GATCCTGCTGCTCGGCCAGACCGTAG 1865 >seq138017 Length=656 Score = 104 bits (114), Expect = 5e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||| ||||| ||||| |||||||||||||| |||| || || ||||| |||| | Sbjct 550 CGATGGTAAGCAATTCGCCACCCACCTGGGTCCAGGCCAAACCCGTCACCTGGCCGATCT 609 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGG 107 |||||||||||||||| ||||| || | | ||||| ||||| ||| Sbjct 610 GATCCTGCTGCTCGGCAAGGCCATAACGGTGCTTGCGTACGCCCAGG 656 >seq184814 Length=2424 Score = 87.8 bits (96), Expect = 4e-15 Identities = 262/398 (66%), Gaps = 10/398 (3%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||| |||| ||||||||| |||| |||||| || || || || || || || | Sbjct 1031 CGATGGTGAGCAGCTCGCCGCCGACCTCGGTCCAGGCAAGACCCGTTACGACGCCAACCT 1090 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 |||||| |||||||| ||||| || ||| |||| || || | | | | | Sbjct 1091 GATCCTCACGCTCGGCCTCGCCGTGGCGGAAGCGCGGCACACCCAGATAATCGTGGATGT 1150 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCT--TGACCGCCTT 178 ||| |||||||| | ||||| | || || || | ||| || |||| ||||| Sbjct 1151 TGTCTGCCGTGACTTCGACCGACTTG-GTCTTGCCCTTG-ATGATCTCGGTGACGGCCTT 1208 Query 179 GCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTA 238 ||| || |||| | || ||||| | | ||| |||||||||||||||||||| | Sbjct 1209 GCGAGCGAGCTTCATCAGCTCACGCTCGAAGTTACGAACACCGGCTTCGCGGGTGTACT- 1267 Query 239 GCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCG---ATCTCGCCCTTCTTCAGGCC 295 || || || || ||| | || | || | || | ||| || ||| | Sbjct 1268 GCTGA--ATCACGGCCATCAGGGCGCCGTCCGTTACGGAAAACTCTTCCGGACGCAGCGC 1325 Query 296 ATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTC 355 || || || ||||||| |||| | ||||||| | | ||| |||||||| Sbjct 1326 ATGTTCCTTGATTGCCTTGGGCAGCAGGTGCCGCTTGGCGATTTCGCGCTTTTCGTCTTC 1385 Query 356 GGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCA 393 |||||||| | | || ||||||||||| ||||||| Sbjct 1386 CGTGTAACCGGCAATACGGATCACTTCCATACGGTCCA 1423 >seq28742 Length=230 Score = 86.0 bits (94), Expect = 1e-14 Identities = 146/211 (69%), Gaps = 23/211 (11%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||||| || ||||||||||||| |||||| |||||||| ||||| |||| | Sbjct 211 CGATGGTCAACAGGTCGCCGCCCACCTCGGTCCAGGCCAGGCCGACCACCTGGCCGATCT 152 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | | | || |||||||| |||| || | | |||||||| ||||| | |||||| Sbjct 151 GGTTGTCCTTCTCGGCCACGCCGAAGTCGTAACGACGCACGCCCAGGAATTTATCCAGGT 92 Query 121 AGTCGGCCGTGACCTTCAC-CG---------------AGAAGCGTTTTTC--CAGC-GCA 161 | ||| |||| |||| || ||| | |||||| |||| ||| Sbjct 91 TCTTGGCATTGACGATCACACGCTTCTCGGCCGCGGTCGAACCCTTTTTCAGCAGCAGCA 32 Query 162 TGTTCCTTGACCGCCTTGCGGCAGATCTTCG 192 | ||||||| |||||||||||||||||| Sbjct 31 T----CTTGACCACCTTGCGGCAGATCTTCG 5 >seq468370 Length=227 Score = 75.2 bits (82), Expect = 3e-11 Identities = 86/116 (74%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 279 TCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATG 338 |||||||||||||| || | | || |||||||| | | || | | | ||||| Sbjct 189 TCGCCCTTCTTCAGCCCGTGATTCTCAACCTGCTTGGCCACCAGATGCGACTTCGCGATC 130 Query 339 TTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 | | ||||||||| ||||||||||| | |||| |||| | |||||||||||||| Sbjct 129 TCGCGCTTCTCGTCCTCGGTGTAACCGGACAGGGGAATGATCTCCATCCGGTCCAG 74 >seq375573 Length=621 Score = 73.4 bits (80), Expect = 9e-11 Identities = 66/83 (80%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 154 CCAGCGCATGTTCCTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCAC 213 ||||||| |||||||||| |||||||||||| ||| ||||||| |||||| || | Sbjct 83 CCAGCGCGATTTCCTTGACCACCTTGCGGCAGACCTTGGCGATCTCGCGCTCGAGATTGC 24 Query 214 GCACACCGGCTTCGCGGGTGTAG 236 |||| || | ||||| |||||| Sbjct 23 GCACGCCCGACTCGCGCGTGTAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152311136832