Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001688.1
Length=394
Score E
Sequences producing significant alignments: (Bits) Value
seq122112 354 2e-95
seq309139 170 4e-40
seq322074 145 2e-32
seq300713 136 9e-30
seq170390 120 7e-25
seq138017 104 5e-20
seq184814 87.8 4e-15
seq28742 86.0 1e-14
seq468370 75.2 3e-11
seq375573 73.4 9e-11
>seq122112
Length=2461
Score = 354 bits (392), Expect = 2e-95
Identities = 315/394 (80%), Gaps = 0/394 (0%)
Strand=Plus/Plus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
||||||||||||| |||||||||||||||||||| ||||| || || ||||| |||| |
Sbjct 222 CGATGGTCAGCAATTCGCCGCCCACCTGGGTCCAGGCCAGCCCGGTCACCTGGCCGATCT 281
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120
|||||||||| ||||| || || |||| | ||||||||||| ||||| | ||| || |
Sbjct 282 GATCCTGCTGTTCGGCGAGACCATAGCGGTGCTTGCGCACGCCCAGGAAATCCTCGAGCG 341
Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180
||||||| |||||| || ||||||||||||| || || | ||| ||||| |
Sbjct 342 AGTCGGCGGTGACCACGACATGGAAGCGTTTTTCCTTGGCGTGCTTCTTCACCGCACGCC 401
Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240
|||| | ||| |||||||| ||||| |||| || || || || || || |||||||| |
Sbjct 402 GGCAAACCTTGGCGATCTGCCGCTCGAGGCTGCGTACGCCCGCCTCACGCGTGTAGTAAC 461
Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300
| | |||||| ||||||| | | || ||||| | |||| |||||||| || ||||
Sbjct 462 GAATGATGTCACGGATCGCCGCTTCCTCGAATTCCAGCTCGGTCTTCTTCAAACCGTTGG 521
Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360
|| ||||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||||
Sbjct 522 CCTGAATCTGCTTTGGCGCGAGGTATTTGGTGGCGATATTGACCTTCTCGTCTTCGGTGT 581
Query 361 AACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394
| ||||||||||||||||||||||| ||||||||
Sbjct 582 AGCCCGGCAGGCGAATCACTTCCATGCGGTCCAG 615
>seq309139
Length=6796
Score = 170 bits (188), Expect = 4e-40
Identities = 285/406 (70%), Gaps = 21/406 (5%)
Strand=Plus/Minus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
|||||||||||| ||||||||||| | |||||||||||| || || |||||||||||
Sbjct 4791 CGATGGTCAGCAGATCGCCGCCCACTTCGGTCCACGCCAGTCCGGTCACCTGACCGACAC 4732
Query 61 GATCCT-GCTGCTCGGCCAGGCCGTAGCTGAATTTGCGC---ACGCCGAGGAAGTGCTCC 116
| | | |||| || || |||| ||| ||| |||| ||||| ||||| | ||
Sbjct 4731 GGTTTTCGCTG-TCAGCACGGCCATAGTCGAA---GCGCTGAACGCCCAGGAAATCCTTA 4676
Query 117 AGGGAGTCGGCCGTGACCTTCACCGAGAAGCGTTTT-------TCCAGC-GCATGTTCCT 168
||| ||| | || | || || |||| |||| | ||| || ||
Sbjct 4675 AGGTTCTCGCCATCGATGGT----GATGTGCTTTTTCGTCTTGTCCATCAGCA-GTGACT 4621
Query 169 TGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGC 228
| ||||| || ||||| | |||| | || ||||| |||| |||||| ||||||||||
Sbjct 4620 TCACCGCTTTACGGCACAATTTCGACAGCTCACGCTCAAGGCTACGCACCCCGGCTTCGC 4561
Query 229 GGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCT 288
||||||||||||| | |||| || ||| | || | |||||| ||||| | |
Sbjct 4560 GGGTGTAGTAGCGAATGATGCCGATGATGGCGCTGTCTTCAACCGTAATCTCACTGGCTT 4501
Query 289 TCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCT 348
||||| | || | ||||||||| ||| || | || | |||||||| | || |
Sbjct 4500 TCAGGGCGTTACGCTCAATCTGCTTCGGCAGCAGATGCTGCTTAGCGATGTTCAGTTTTT 4441
Query 349 CGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394
| |||||||||||||||| ||| |||||||||||||| ||||| ||
Sbjct 4440 CATCTTCGGTGTAACCCGACAGACGAATCACTTCCATACGGTCAAG 4395
Score = 77.0 bits (84), Expect = 7e-12
Identities = 71/90 (79%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 305 AATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGTAACC 364
||||||||| ||| || | || |||| ||||| | || || ||||||||||||||
Sbjct 4304 AATCTGCTTCGGCAGCAGATGCTGCTTGGCAATGTTCAGTTTTTCATCTTCGGTGTAACC 4245
Query 365 CGGCAGGCGAATCACTTCCATCCGGTCCAG 394
|| ||| |||||||||||||| ||||| ||
Sbjct 4244 CGACAGACGAATCACTTCCATACGGTCAAG 4215
>seq322074
Length=376
Score = 145 bits (160), Expect = 2e-32
Identities = 250/370 (68%), Gaps = 30/370 (8%)
Strand=Plus/Minus
Query 8 CAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTTGATCCTG 67
||||| |||||||| |||| |||||| |||||||| || ||| | |||| | | |||
Sbjct 370 CAGCAGGTCGCCGCCGACCTCGGTCCAGGCCAGGCCGGTCACCAGGCCGATCTCGTTCTG 311
Query 68 CTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGGAGTCGGC 127
|| |||||| ||||| || ||| ||||||||| || | | ||| ||| | |
Sbjct 310 CTCCTCGGCACGGCCGAAGTCGAAGCGGCGCACGCCCTGGTACTTCTCAAGGTTCTTCTC 251
Query 128 CGTGACCTTCACCGAGAAG----------CGTTTTT--------------------CCAG 157
||||| ||||| || | || || ||||
Sbjct 250 GTTGACCACCACCGCCGAGGACTTCTTGCCCTTCTTGGCAACCGCCTGCGGGCCACCCAG 191
Query 158 CGCATGTTCCTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCAC 217
||| | ||||| ||| ||||||||||||| |||||||| |||||||||| |||||
Sbjct 190 CGCCAGCTCCTTCACCACCTTGCGGCAGATGCGCGCGATCTCGCGCTCCAGGTTGCGCAC 131
Query 218 ACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGAT 277
|||| ||||| ||||| ||||| |||||||||||||||| ||| | || | | |
Sbjct 130 GCCGGACTCGCGCGTGTAATAGCGCACGATGTCGCGGATCGCACCGGCCTCGATCTTCAG 71
Query 278 CTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGAT 337
||| || ||||||||| |||||| | |||||||||| | ||||| ||||||
Sbjct 70 CTCCTCCGGCTTCAGGCCGTTGGCCTTGAGCTGCTTGGGCACCAGGTAGCGCGCGGCGAT 11
Query 338 GTTGATCTTC 347
||||| ||||
Sbjct 10 GTTGAGCTTC 1
>seq300713
Length=350
Score = 136 bits (150), Expect = 9e-30
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 192 GCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCG 251
||||||| |||||| || ||||| || | ||||| ||||||||||| |||||||||
Sbjct 350 GCGATCTCGCGCTCGAGATTGCGCACGCCCGACTCGCGCGTGTAGTAGCGCACGATGTCG 291
Query 252 CGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGC 311
||||||| | | || | |||| | |||||| ||||||||| | ||||
Sbjct 290 CGGATCGCATCCTCGCTAACGGTCAGCTCGGCGGCCTTCAGACCATTGGCCTTGAGCTGC 231
Query 312 TTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGG 371
|||||| ||||| |||||||||||| ||||||||| |||||||||||||| | |
Sbjct 230 TTGGGCAGCAGGTAGCGCGTGGCGATGTTGAGCTTCTCGTCCTCGGTGTAACCCGGAATG 171
Query 372 CGAATCACTTCCATCCGGTCCAG 394
|| ||||| ||||| ||||| ||
Sbjct 170 CGGATCACCTCCATGCGGTCGAG 148
>seq170390
Length=1865
Score = 120 bits (132), Expect = 7e-25
Identities = 78/86 (91%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
|||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||| |
Sbjct 1780 CGATGGTCAGCAGTTCGCCACCCACCTGGGTCCAGGCCAGGCCGGTGACCTGACCGATCT 1839
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAG 86
||||||||||||||||||| ||||||
Sbjct 1840 GATCCTGCTGCTCGGCCAGACCGTAG 1865
>seq138017
Length=656
Score = 104 bits (114), Expect = 5e-20
Identities = 87/107 (81%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
||||||| ||||| ||||| |||||||||||||| |||| || || ||||| |||| |
Sbjct 550 CGATGGTAAGCAATTCGCCACCCACCTGGGTCCAGGCCAAACCCGTCACCTGGCCGATCT 609
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGG 107
|||||||||||||||| ||||| || | | ||||| ||||| |||
Sbjct 610 GATCCTGCTGCTCGGCAAGGCCATAACGGTGCTTGCGTACGCCCAGG 656
>seq184814
Length=2424
Score = 87.8 bits (96), Expect = 4e-15
Identities = 262/398 (66%), Gaps = 10/398 (3%)
Strand=Plus/Plus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
||||||| |||| ||||||||| |||| |||||| || || || || || || || |
Sbjct 1031 CGATGGTGAGCAGCTCGCCGCCGACCTCGGTCCAGGCAAGACCCGTTACGACGCCAACCT 1090
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120
|||||| |||||||| ||||| || ||| |||| || || | | | | |
Sbjct 1091 GATCCTCACGCTCGGCCTCGCCGTGGCGGAAGCGCGGCACACCCAGATAATCGTGGATGT 1150
Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCT--TGACCGCCTT 178
||| |||||||| | ||||| | || || || | ||| || |||| |||||
Sbjct 1151 TGTCTGCCGTGACTTCGACCGACTTG-GTCTTGCCCTTG-ATGATCTCGGTGACGGCCTT 1208
Query 179 GCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTA 238
||| || |||| | || ||||| | | ||| |||||||||||||||||||| |
Sbjct 1209 GCGAGCGAGCTTCATCAGCTCACGCTCGAAGTTACGAACACCGGCTTCGCGGGTGTACT- 1267
Query 239 GCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCG---ATCTCGCCCTTCTTCAGGCC 295
|| || || || ||| | || | || | || | ||| || ||| |
Sbjct 1268 GCTGA--ATCACGGCCATCAGGGCGCCGTCCGTTACGGAAAACTCTTCCGGACGCAGCGC 1325
Query 296 ATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTC 355
|| || || ||||||| |||| | ||||||| | | ||| ||||||||
Sbjct 1326 ATGTTCCTTGATTGCCTTGGGCAGCAGGTGCCGCTTGGCGATTTCGCGCTTTTCGTCTTC 1385
Query 356 GGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCA 393
|||||||| | | || ||||||||||| |||||||
Sbjct 1386 CGTGTAACCGGCAATACGGATCACTTCCATACGGTCCA 1423
>seq28742
Length=230
Score = 86.0 bits (94), Expect = 1e-14
Identities = 146/211 (69%), Gaps = 23/211 (11%)
Strand=Plus/Minus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
||||||||| || ||||||||||||| |||||| |||||||| ||||| |||| |
Sbjct 211 CGATGGTCAACAGGTCGCCGCCCACCTCGGTCCAGGCCAGGCCGACCACCTGGCCGATCT 152
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120
| | | || |||||||| |||| || | | |||||||| ||||| | ||||||
Sbjct 151 GGTTGTCCTTCTCGGCCACGCCGAAGTCGTAACGACGCACGCCCAGGAATTTATCCAGGT 92
Query 121 AGTCGGCCGTGACCTTCAC-CG---------------AGAAGCGTTTTTC--CAGC-GCA 161
| ||| |||| |||| || ||| | |||||| |||| |||
Sbjct 91 TCTTGGCATTGACGATCACACGCTTCTCGGCCGCGGTCGAACCCTTTTTCAGCAGCAGCA 32
Query 162 TGTTCCTTGACCGCCTTGCGGCAGATCTTCG 192
| ||||||| ||||||||||||||||||
Sbjct 31 T----CTTGACCACCTTGCGGCAGATCTTCG 5
>seq468370
Length=227
Score = 75.2 bits (82), Expect = 3e-11
Identities = 86/116 (74%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 279 TCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATG 338
|||||||||||||| || | | || |||||||| | | || | | | |||||
Sbjct 189 TCGCCCTTCTTCAGCCCGTGATTCTCAACCTGCTTGGCCACCAGATGCGACTTCGCGATC 130
Query 339 TTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394
| | ||||||||| ||||||||||| | |||| |||| | ||||||||||||||
Sbjct 129 TCGCGCTTCTCGTCCTCGGTGTAACCGGACAGGGGAATGATCTCCATCCGGTCCAG 74
>seq375573
Length=621
Score = 73.4 bits (80), Expect = 9e-11
Identities = 66/83 (80%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 154 CCAGCGCATGTTCCTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCAC 213
||||||| |||||||||| |||||||||||| ||| ||||||| |||||| || |
Sbjct 83 CCAGCGCGATTTCCTTGACCACCTTGCGGCAGACCTTGGCGATCTCGCGCTCGAGATTGC 24
Query 214 GCACACCGGCTTCGCGGGTGTAG 236
|||| || | ||||| ||||||
Sbjct 23 GCACGCCCGACTCGCGCGTGTAG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1152311136832
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