Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001690.1
Length=455
Score E
Sequences producing significant alignments: (Bits) Value
seq507173 556 3e-156
seq489256 497 3e-138
seq370001 284 3e-74
seq272080 271 2e-70
seq315295 215 1e-53
seq521031 176 1e-41
seq181407 109 1e-21
seq71068 104 6e-20
>seq507173
Length=1254
Score = 556 bits (616), Expect = 3e-156
Identities = 371/413 (90%), Gaps = 0/413 (0%)
Strand=Plus/Minus
Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60
|||||||||||||||| |||||||||||||| ||||| |||||||||||||| || ||||
Sbjct 413 CGATCAGGAACACTTCGCGGGCACCGGCGCCCAGGGCGGATTCACGGATGGCGCGGCGCT 354
Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120
| |||||||| ||||||||||| |||||||||||||| || || ||||||||||| |
Sbjct 353 CGACCTGGGTCGACTTGCACGGCACGCAGATCAGCACGCGCGGCGAAGGCTGCAGGAAGC 294
Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 293 TGTTTTCGTGAACCTTGTTGATGAAGTATTGCAGCATCTTTTCGCAGACGCTGAAGTCGG 234
Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240
||||||||||||| |||||||| || ||||| || || ||||| || |||||||||||||
Sbjct 233 CGATCACGCCGTCCTTCATCGGGCGGATGGCGGCGATGTTGCCCGGCGTACGGCCGAGCA 174
Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGG 300
|||||||||| |||||||||||||| || ||||||||||| || |||||||| |||||||
Sbjct 173 TGCGCTTGGCGTCGGTGCCGACGGCCACAACACTTTTCTGGTTGCCATGGGTACGAATGG 114
Query 301 CCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGG 360
| || ||||| ||||| ||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct 113 CGACGACCGACGGCTCGTTCAGGACGATGCCGCGCTCGCGTACATAAATAAGGGTATTGG 54
Query 361 CAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTG 413
|||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 53 CAGTGCCCAGGTCAATCGACAGATCGCTGGAAAACATGCCACGCAGTTTTTTG 1
>seq489256
Length=2758
Score = 497 bits (550), Expect = 3e-138
Identities = 372/436 (85%), Gaps = 3/436 (1%)
Strand=Plus/Plus
Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60
||||||||||||| ||||||||||| ||||| || || ||||| || ||||| |||||||
Sbjct 1705 CGATCAGGAACACCTCACGGGCACCCGCGCCCAGCGCGGATTCGCGAATGGCGCGACGCT 1764
Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120
| |||||||| |||||||| || |||||||||||||| || || |||||||||||||| |
Sbjct 1765 CGACCTGGGTCGACTTGCAGGGCACGCAGATCAGCACCCGCGGACTGGGCTGCAGGAAGC 1824
Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180
|||| ||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||
Sbjct 1825 TGTTCTCGTGCACCTTGTTGATGAAGTATTGCAACATCTTTTCGCAGACGCTGAAGTCGG 1884
Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240
|||| |||||||| |||||||| |||||||| | || ||||| || || ||||||||||
Sbjct 1885 CGATGACGCCGTCCTTCATCGGGCGAATGGCGGAGATGTTGCCCGGCGTCCGGCCGAGCA 1944
Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGG 300
|||||||||| ||||| |||||||| ||||| || ||||| || || ||||| || ||||
Sbjct 1945 TGCGCTTGGCGTCGGTACCGACGGCGACGACGCTCTTCTGGTTGCCGTGGGTACGGATGG 2004
Query 301 CCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGG 360
| || ||||| ||||| || || ||||| || |||||||| || ||||||||||||||||
Sbjct 2005 CGACGACCGACGGCTCGTTGAGCACGATGCCACGCTCGCGGACATAAATAAGGGTGTTGG 2064
Query 361 CAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACATGG 420
| || |||||||| || || ||||||||||| ||||||||||||| |||||||||||||
Sbjct 2065 CGGTTCCCAGGTCGATCGACAGATCGCTGGAGAACATGCCACGCAATTTCTTGAACATGA 2124
Query 421 GGAAAGGACCCTAAGC 436
|| ||||||| ||
Sbjct 2125 GG---TGACCCTAGGC 2137
>seq370001
Length=19830
Score = 284 bits (314), Expect = 3e-74
Identities = 316/422 (75%), Gaps = 6/422 (1%)
Strand=Plus/Plus
Query 3 ATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCC 62
|||||||| |||||||| || || || || | || |||||||| || |||||||| ||
Sbjct 7858 ATCAGGAAGACTTCACGCGCGCCTGCACCCTGAGCGGATTCACGAATCGCACGACGTTCT 7917
Query 63 ACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTG 122
|||||||||| | |||||||||| |||||| || |||||||| ||| || |||
Sbjct 7918 ACCTGGGTGGCACCGACGGGAACGCAGACCAGCACGCGTGGGCTGGGACGCATAAAGCTG 7977
Query 123 TTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCG 182
|| |||||||| |||||||||| ||||||||| || ||| ||| ||||| |||
Sbjct 7978 TTGCTGTGAACCTGCTTGATGAAGTGCTGCAGCATTTTTTCGGTAACGAAAAAGTCAGCG 8037
Query 183 ATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATG 242
|| ||||| |||||||| || ||||| ||||| ||||||||||| ||||||||||||||
Sbjct 8038 ATAACGCCATCTTTCATTGGGCGAATAGCAGCGATATTGCCTGGCGTACGGCCGAGCATC 8097
Query 243 CGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACC------ATGGGTCCGA 296
| ||||| || || ||||| ||||||||||| | ||| || |||
Sbjct 8098 TGTTTGGCGTCATGACCTACGGCCGCGACACTTTTCGGCGAACCGGCACGATCCTGGCGA 8157
Query 297 ATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTG 356
|| || || || || ||||| ||||| ||||| || | | |||||||| |||||
Sbjct 8158 ATAGCGACCACGGAAGGCTCGTTCAGCACGATGCCCTGTCCTTTTACGTAAATCAGGGTA 8217
Query 357 TTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAAC 416
|| || || |||||||||||||| | || |||||||||||||||| | ||| || |||
Sbjct 8218 TTCGCGGTACCCAGGTCAATGGACAAGTCATTGGAAAACATGCCACGAAATTTTTTAAAC 8277
Query 417 AT 418
||
Sbjct 8278 AT 8279
>seq272080
Length=1767
Score = 271 bits (300), Expect = 2e-70
Identities = 319/432 (74%), Gaps = 12/432 (3%)
Strand=Plus/Minus
Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60
||||||| |||| ||||| |||||||| | || ||||| || |||||| || |
Sbjct 1453 CGATCAGCGACACGTCACGCGCACCGGCTTCCAGCGCCGAGTCCTTGATGGCGCGCTTTT 1394
Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120
|||||||||| || | ||| |||||||||||||| || |||||||| ||||||| |
Sbjct 1393 CCACCTGGGTCGAACCGGCCGGCACGCAGATCAGCACGCGGGGGCTGGGACGCAGGAAGC 1334
Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180
| ||| ||||| ||||||||||||| |||||||| |||| | | |||| ||||
Sbjct 1333 GCGACTTGTGCACCTTCTTGATGAAGTACTTCAGCATCTCCTCGGTGTAGGTGAAATCGG 1274
Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240
|||| |||||||| |||||||| ||| | | || ||||| || || ||||||||||
Sbjct 1273 CGATGACGCCGTCCTTCATCGGGCGATGCGTGGTGATGTTGCCGGGGGTGCGGCCGAGCA 1214
Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTC------- 293
| |||||||||||||||||||||| |||| ||||| || ||||
Sbjct 1213 TCTGCTTGGCCTCGGTGCCGACGGCGGCGACGACCTTCTG---GCCGGCGGTCCGGTCCT 1157
Query 294 --CGAATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAA 351
|| | |||||| ||||| ||||| || || ||||| || | |||| ||| | || |
Sbjct 1156 GGCGCACGGCCACGACCGACGGCTCGTTGAGCACGATGCCCTGGCCGCGGACGAAGATGA 1097
Query 352 GGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCT 411
|||| ||||| ||||||||||| ||||| || ||| |||| |||| || || | ||||
Sbjct 1096 GGGTATTGGCGGTGCCCAGGTCGATGGACAGGTCGTTGGAGAACAGACCGCGGAACTTCT 1037
Query 412 TGAACATGGGGA 423
||||||| ||||
Sbjct 1036 TGAACATCGGGA 1025
>seq315295
Length=351
Score = 215 bits (238), Expect = 1e-53
Identities = 215/276 (78%), Gaps = 2/276 (1%)
Strand=Plus/Plus
Query 3 ATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCC 62
||||||||||||||||| ||||| || || |||| ||||| ||||| || || |||||
Sbjct 28 ATCAGGAACACTTCACGTGCACCCGCCCCCTGGGCAGATTCGCGGATTGCGCGGCGCTCA 87
Query 63 ACCTGGGTGG-ACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACT 121
||||| |||| || || || || || | |||||| || || || || ||| || ||
Sbjct 88 ACCTGCGTGGCACCGACA-GGCACACATACCAGCACGCGCGGACTTGGGCGCATAAAGCT 146
Query 122 GTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGC 181
||| |||||||| || ||||||| ||||||||| |||||| ||| |||||||||
Sbjct 147 GTTGCTGTGAACCTGCTTAATGAAGTGCTGCAGCATTTTCTCGGTCACGAAGAAGTCGGC 206
Query 182 GATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCAT 241
||| ||||| |||||||| ||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 207 GATAACGCCATCTTTCATAGGACGAATGGCTGCAATATTGCCCGGTGTACGGCCTAGCAT 266
Query 242 GCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTT 277
| ||||| || || ||||| | ||||||||
Sbjct 267 CTGTTTGGCGTCATGACCAACGGCCGCTACACTTTT 302
>seq521031
Length=300
Score = 176 bits (194), Expect = 1e-41
Identities = 198/265 (75%), Gaps = 0/265 (0%)
Strand=Plus/Minus
Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60
|||||||| | || || || || ||||| | ||||||||| ||| || || ||||
Sbjct 267 CGATCAGGTAGACATCGCGCGCGCCGGCCTCTTCGGCCGATTCCTTGATCGCGCGGCGCT 208
Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120
||||||||||| | ||| ||||||| |||||| || |||||||| ||||||| |
Sbjct 207 CCACCTGGGTGCTGCCGGCCGGCACGCAGACCAGCACGCGCGGGCTGGGGCGCAGGAAGC 148
Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180
| ||| ||||| ||||||||||||| |||||| |||| | | |||| ||||
Sbjct 147 GCGACTTGTGCACCTTCTTGATGAAGTACTTGAGCATCGCCTCGGTGTAGGTGAAATCGG 88
Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240
|||| |||||||| |||||||| || |||| | || | ||| || || ||||| ||||
Sbjct 87 CGATGACGCCGTCCTTCATCGGGCGGATGGTGGTGATGTGGCCCGGGGTGCGGCCCAGCA 28
Query 241 TGCGCTTGGCCTCGGTGCCGACGGC 265
| ||||||| |||| |||||||||
Sbjct 27 TCTGCTTGGCTTCGGCGCCGACGGC 3
>seq181407
Length=996
Score = 109 bits (120), Expect = 1e-21
Identities = 152/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 213 GCAATATTGCCTGGTGTACGGCCGAGCATGCGCTTGGCCTCGGTGCCGACGGCAACGACA 272
|| || ||||| || ||||| || ||||| |||| || || ||||| || | ||
Sbjct 996 GCGATGTTGCCCGGCGTACGACCAAGCATCTGCTTCGCTTCATGACCGACTGCGGCCACG 937
Query 273 CTTTTCTGATTACCATG--GGTCC----GAATGGCCACAACCGATGGCTCATTCAGGACG 326
|||||| | ||| | ||| |||||||||| || || ||||||||||| |||
Sbjct 936 CTTTTCGGTGAACCGGCACGATCCTGGCGAATGGCCACTACGGAAGGCTCATTCAGTACG 877
Query 327 ATACCGCGCTCGCGCACGTAAATAAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCG 386
|| || | | || ||||| ||||| || || || |||||||||||||| || ||
Sbjct 876 ATGCCTTGTCCTTTTACATAAATCAGGGTATTCGCGGTACCCAGGTCAATGGACAGGTCA 817
Query 387 CTGGAAAACATGCCACGCAGTTTCTTGAACAT 418
|||||||||||||||| | ||| || |||||
Sbjct 816 TTGGAAAACATGCCACGAAATTTTTTCAACAT 785
>seq71068
Length=1324
Score = 104 bits (114), Expect = 6e-20
Identities = 165/234 (71%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 140 GATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCGATCACGCCGTCTTTCAT 199
||||||||| ||||||||| ||||||| | ||||||||||||||||||||| || |
Sbjct 877 GATGAAGTAGCGCAGCATCTGCTCGCAGGCCTCGAAGTCGGCGATCACGCCGTCCTTGAG 936
Query 200 CGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTTGGCCTCGGTGCC 259
|| || |||| || || ||| | || | ||||||| ||||||||| || ||| ||
Sbjct 937 GGGGCGGATGGGGGCGATGTTGTCGGGGGCGCGGCCGATCATGCGCTTCGCGTCGTGCCC 996
Query 260 GACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGGCCACAACCGATGGCTCATT 319
|||||| | || | | ||| | | | ||| || ||||| || || ||||| |
Sbjct 997 GACGGCGAGGA---TCTCCTGGCT-CGA--GGTGTTGATCGCCACGACGGAGGGCTCGTC 1050
Query 320 CAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGGCAGTGCCCAGGTC 373
|| | | || | | |||||||| | | |||||||| ||||| |||||
Sbjct 1051 GAGCAGCACGCCTCTGCCTCGCACGTAGACCAACGTGTTGGCCGTGCCGAGGTC 1104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1346485112928
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