Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq507173 556 3e-156 seq489256 497 3e-138 seq370001 284 3e-74 seq272080 271 2e-70 seq315295 215 1e-53 seq521031 176 1e-41 seq181407 109 1e-21 seq71068 104 6e-20 >seq507173 Length=1254 Score = 556 bits (616), Expect = 3e-156 Identities = 371/413 (90%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 |||||||||||||||| |||||||||||||| ||||| |||||||||||||| || |||| Sbjct 413 CGATCAGGAACACTTCGCGGGCACCGGCGCCCAGGGCGGATTCACGGATGGCGCGGCGCT 354 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 | |||||||| ||||||||||| |||||||||||||| || || ||||||||||| | Sbjct 353 CGACCTGGGTCGACTTGCACGGCACGCAGATCAGCACGCGCGGCGAAGGCTGCAGGAAGC 294 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 293 TGTTTTCGTGAACCTTGTTGATGAAGTATTGCAGCATCTTTTCGCAGACGCTGAAGTCGG 234 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 ||||||||||||| |||||||| || ||||| || || ||||| || ||||||||||||| Sbjct 233 CGATCACGCCGTCCTTCATCGGGCGGATGGCGGCGATGTTGCCCGGCGTACGGCCGAGCA 174 Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGG 300 |||||||||| |||||||||||||| || ||||||||||| || |||||||| ||||||| Sbjct 173 TGCGCTTGGCGTCGGTGCCGACGGCCACAACACTTTTCTGGTTGCCATGGGTACGAATGG 114 Query 301 CCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGG 360 | || ||||| ||||| ||||||||||| ||||||||||| || ||||||||||| |||| Sbjct 113 CGACGACCGACGGCTCGTTCAGGACGATGCCGCGCTCGCGTACATAAATAAGGGTATTGG 54 Query 361 CAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTG 413 |||||||||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct 53 CAGTGCCCAGGTCAATCGACAGATCGCTGGAAAACATGCCACGCAGTTTTTTG 1 >seq489256 Length=2758 Score = 497 bits (550), Expect = 3e-138 Identities = 372/436 (85%), Gaps = 3/436 (1%) Strand=Plus/Plus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 ||||||||||||| ||||||||||| ||||| || || ||||| || ||||| ||||||| Sbjct 1705 CGATCAGGAACACCTCACGGGCACCCGCGCCCAGCGCGGATTCGCGAATGGCGCGACGCT 1764 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 | |||||||| |||||||| || |||||||||||||| || || |||||||||||||| | Sbjct 1765 CGACCTGGGTCGACTTGCAGGGCACGCAGATCAGCACCCGCGGACTGGGCTGCAGGAAGC 1824 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 |||| ||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||| Sbjct 1825 TGTTCTCGTGCACCTTGTTGATGAAGTATTGCAACATCTTTTCGCAGACGCTGAAGTCGG 1884 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 |||| |||||||| |||||||| |||||||| | || ||||| || || |||||||||| Sbjct 1885 CGATGACGCCGTCCTTCATCGGGCGAATGGCGGAGATGTTGCCCGGCGTCCGGCCGAGCA 1944 Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGG 300 |||||||||| ||||| |||||||| ||||| || ||||| || || ||||| || |||| Sbjct 1945 TGCGCTTGGCGTCGGTACCGACGGCGACGACGCTCTTCTGGTTGCCGTGGGTACGGATGG 2004 Query 301 CCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGG 360 | || ||||| ||||| || || ||||| || |||||||| || |||||||||||||||| Sbjct 2005 CGACGACCGACGGCTCGTTGAGCACGATGCCACGCTCGCGGACATAAATAAGGGTGTTGG 2064 Query 361 CAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACATGG 420 | || |||||||| || || ||||||||||| ||||||||||||| ||||||||||||| Sbjct 2065 CGGTTCCCAGGTCGATCGACAGATCGCTGGAGAACATGCCACGCAATTTCTTGAACATGA 2124 Query 421 GGAAAGGACCCTAAGC 436 || ||||||| || Sbjct 2125 GG---TGACCCTAGGC 2137 >seq370001 Length=19830 Score = 284 bits (314), Expect = 3e-74 Identities = 316/422 (75%), Gaps = 6/422 (1%) Strand=Plus/Plus Query 3 ATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCC 62 |||||||| |||||||| || || || || | || |||||||| || |||||||| || Sbjct 7858 ATCAGGAAGACTTCACGCGCGCCTGCACCCTGAGCGGATTCACGAATCGCACGACGTTCT 7917 Query 63 ACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTG 122 |||||||||| | |||||||||| |||||| || |||||||| ||| || ||| Sbjct 7918 ACCTGGGTGGCACCGACGGGAACGCAGACCAGCACGCGTGGGCTGGGACGCATAAAGCTG 7977 Query 123 TTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCG 182 || |||||||| |||||||||| ||||||||| || ||| ||| ||||| ||| Sbjct 7978 TTGCTGTGAACCTGCTTGATGAAGTGCTGCAGCATTTTTTCGGTAACGAAAAAGTCAGCG 8037 Query 183 ATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATG 242 || ||||| |||||||| || ||||| ||||| ||||||||||| |||||||||||||| Sbjct 8038 ATAACGCCATCTTTCATTGGGCGAATAGCAGCGATATTGCCTGGCGTACGGCCGAGCATC 8097 Query 243 CGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACC------ATGGGTCCGA 296 | ||||| || || ||||| ||||||||||| | ||| || ||| Sbjct 8098 TGTTTGGCGTCATGACCTACGGCCGCGACACTTTTCGGCGAACCGGCACGATCCTGGCGA 8157 Query 297 ATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTG 356 || || || || || ||||| ||||| ||||| || | | |||||||| ||||| Sbjct 8158 ATAGCGACCACGGAAGGCTCGTTCAGCACGATGCCCTGTCCTTTTACGTAAATCAGGGTA 8217 Query 357 TTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAAC 416 || || || |||||||||||||| | || |||||||||||||||| | ||| || ||| Sbjct 8218 TTCGCGGTACCCAGGTCAATGGACAAGTCATTGGAAAACATGCCACGAAATTTTTTAAAC 8277 Query 417 AT 418 || Sbjct 8278 AT 8279 >seq272080 Length=1767 Score = 271 bits (300), Expect = 2e-70 Identities = 319/432 (74%), Gaps = 12/432 (3%) Strand=Plus/Minus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 ||||||| |||| ||||| |||||||| | || ||||| || |||||| || | Sbjct 1453 CGATCAGCGACACGTCACGCGCACCGGCTTCCAGCGCCGAGTCCTTGATGGCGCGCTTTT 1394 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 |||||||||| || | ||| |||||||||||||| || |||||||| ||||||| | Sbjct 1393 CCACCTGGGTCGAACCGGCCGGCACGCAGATCAGCACGCGGGGGCTGGGACGCAGGAAGC 1334 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 | ||| ||||| ||||||||||||| |||||||| |||| | | |||| |||| Sbjct 1333 GCGACTTGTGCACCTTCTTGATGAAGTACTTCAGCATCTCCTCGGTGTAGGTGAAATCGG 1274 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 |||| |||||||| |||||||| ||| | | || ||||| || || |||||||||| Sbjct 1273 CGATGACGCCGTCCTTCATCGGGCGATGCGTGGTGATGTTGCCGGGGGTGCGGCCGAGCA 1214 Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTC------- 293 | |||||||||||||||||||||| |||| ||||| || |||| Sbjct 1213 TCTGCTTGGCCTCGGTGCCGACGGCGGCGACGACCTTCTG---GCCGGCGGTCCGGTCCT 1157 Query 294 --CGAATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAA 351 || | |||||| ||||| ||||| || || ||||| || | |||| ||| | || | Sbjct 1156 GGCGCACGGCCACGACCGACGGCTCGTTGAGCACGATGCCCTGGCCGCGGACGAAGATGA 1097 Query 352 GGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCT 411 |||| ||||| ||||||||||| ||||| || ||| |||| |||| || || | |||| Sbjct 1096 GGGTATTGGCGGTGCCCAGGTCGATGGACAGGTCGTTGGAGAACAGACCGCGGAACTTCT 1037 Query 412 TGAACATGGGGA 423 ||||||| |||| Sbjct 1036 TGAACATCGGGA 1025 >seq315295 Length=351 Score = 215 bits (238), Expect = 1e-53 Identities = 215/276 (78%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 3 ATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCC 62 ||||||||||||||||| ||||| || || |||| ||||| ||||| || || ||||| Sbjct 28 ATCAGGAACACTTCACGTGCACCCGCCCCCTGGGCAGATTCGCGGATTGCGCGGCGCTCA 87 Query 63 ACCTGGGTGG-ACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACT 121 ||||| |||| || || || || || | |||||| || || || || ||| || || Sbjct 88 ACCTGCGTGGCACCGACA-GGCACACATACCAGCACGCGCGGACTTGGGCGCATAAAGCT 146 Query 122 GTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGC 181 ||| |||||||| || ||||||| ||||||||| |||||| ||| ||||||||| Sbjct 147 GTTGCTGTGAACCTGCTTAATGAAGTGCTGCAGCATTTTCTCGGTCACGAAGAAGTCGGC 206 Query 182 GATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCAT 241 ||| ||||| |||||||| ||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 207 GATAACGCCATCTTTCATAGGACGAATGGCTGCAATATTGCCCGGTGTACGGCCTAGCAT 266 Query 242 GCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTT 277 | ||||| || || ||||| | |||||||| Sbjct 267 CTGTTTGGCGTCATGACCAACGGCCGCTACACTTTT 302 >seq521031 Length=300 Score = 176 bits (194), Expect = 1e-41 Identities = 198/265 (75%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 |||||||| | || || || || ||||| | ||||||||| ||| || || |||| Sbjct 267 CGATCAGGTAGACATCGCGCGCGCCGGCCTCTTCGGCCGATTCCTTGATCGCGCGGCGCT 208 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 ||||||||||| | ||| ||||||| |||||| || |||||||| ||||||| | Sbjct 207 CCACCTGGGTGCTGCCGGCCGGCACGCAGACCAGCACGCGCGGGCTGGGGCGCAGGAAGC 148 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 | ||| ||||| ||||||||||||| |||||| |||| | | |||| |||| Sbjct 147 GCGACTTGTGCACCTTCTTGATGAAGTACTTGAGCATCGCCTCGGTGTAGGTGAAATCGG 88 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 |||| |||||||| |||||||| || |||| | || | ||| || || ||||| |||| Sbjct 87 CGATGACGCCGTCCTTCATCGGGCGGATGGTGGTGATGTGGCCCGGGGTGCGGCCCAGCA 28 Query 241 TGCGCTTGGCCTCGGTGCCGACGGC 265 | ||||||| |||| ||||||||| Sbjct 27 TCTGCTTGGCTTCGGCGCCGACGGC 3 >seq181407 Length=996 Score = 109 bits (120), Expect = 1e-21 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 213 GCAATATTGCCTGGTGTACGGCCGAGCATGCGCTTGGCCTCGGTGCCGACGGCAACGACA 272 || || ||||| || ||||| || ||||| |||| || || ||||| || | || Sbjct 996 GCGATGTTGCCCGGCGTACGACCAAGCATCTGCTTCGCTTCATGACCGACTGCGGCCACG 937 Query 273 CTTTTCTGATTACCATG--GGTCC----GAATGGCCACAACCGATGGCTCATTCAGGACG 326 |||||| | ||| | ||| |||||||||| || || ||||||||||| ||| Sbjct 936 CTTTTCGGTGAACCGGCACGATCCTGGCGAATGGCCACTACGGAAGGCTCATTCAGTACG 877 Query 327 ATACCGCGCTCGCGCACGTAAATAAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCG 386 || || | | || ||||| ||||| || || || |||||||||||||| || || Sbjct 876 ATGCCTTGTCCTTTTACATAAATCAGGGTATTCGCGGTACCCAGGTCAATGGACAGGTCA 817 Query 387 CTGGAAAACATGCCACGCAGTTTCTTGAACAT 418 |||||||||||||||| | ||| || ||||| Sbjct 816 TTGGAAAACATGCCACGAAATTTTTTCAACAT 785 >seq71068 Length=1324 Score = 104 bits (114), Expect = 6e-20 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 140 GATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCGATCACGCCGTCTTTCAT 199 ||||||||| ||||||||| ||||||| | ||||||||||||||||||||| || | Sbjct 877 GATGAAGTAGCGCAGCATCTGCTCGCAGGCCTCGAAGTCGGCGATCACGCCGTCCTTGAG 936 Query 200 CGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTTGGCCTCGGTGCC 259 || || |||| || || ||| | || | ||||||| ||||||||| || ||| || Sbjct 937 GGGGCGGATGGGGGCGATGTTGTCGGGGGCGCGGCCGATCATGCGCTTCGCGTCGTGCCC 996 Query 260 GACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGGCCACAACCGATGGCTCATT 319 |||||| | || | | ||| | | | ||| || ||||| || || ||||| | Sbjct 997 GACGGCGAGGA---TCTCCTGGCT-CGA--GGTGTTGATCGCCACGACGGAGGGCTCGTC 1050 Query 320 CAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGGCAGTGCCCAGGTC 373 || | | || | | |||||||| | | |||||||| ||||| ||||| Sbjct 1051 GAGCAGCACGCCTCTGCCTCGCACGTAGACCAACGTGTTGGCCGTGCCGAGGTC 1104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1346485112928