Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001693.1 Length=610 Score E Sequences producing significant alignments: (Bits) Value seq446386 232 2e-58 >seq446386 Length=1427 Score = 232 bits (256), Expect = 2e-58 Identities = 364/515 (71%), Gaps = 7/515 (1%) Strand=Plus/Minus Query 12 CACCCACCCCGGTGTGGTGCGGCGACCTCCCCTACATCTGGGCCCATGGGAAATGGCATT 71 |||| | || ||||||||| ||||| || |||| ||||||| || || ||||||| Sbjct 512 CACCGAACCAGGTGTGGTGTGGCGATATCACCTATGTCTGGGCGCAGGGTCGCTGGCATT 453 Query 72 ACCTGGCTGTCGCGCTGGA--TCTTTGCTCGCGCCGGGTGGTGGCTTGGGCGTTGACCAG 129 || | || || | |||| | ||||| || || || |||| |||||||| || | Sbjct 452 ACGTCGCGGTAGTCATGGACTTGTTTGCCCGT--CGCGTCGTGGGCTGGGCGTTTTCC-G 396 Query 130 ACACCCCGGACGCCGATCTGGCTATGCGGGCGCTGGATATGGCTTACCAGCCTGCACGA- 188 ||| || || || ||| ||| || | ||| |||| | ||||||| ||| || || Sbjct 395 CCACGCCTGATGCTGATTTGGTCATCCAGGCCTTGGACAGGGCTTACGAGCA-GCGCGGT 337 Query 189 CGACCTCATGGTCTGCTGGTTCACTCGGATCAAGGGTCGCAGTATGCGAGTCGTTTATTT 248 || |||| | |||| ||||| || || ||| || |||| ||||| ||| Sbjct 336 CGGCCTCGAGAGGTGCTCTTTCACAGCGACCAGGGGAGCCAATATGGCAGTCGACGCTTT 277 Query 249 CGCCAGCGGCTGTGGCGTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCTGG 308 ||||||||||| ||||| || ||| | ||||||||||||| | || || || ||| | Sbjct 276 CGCCAGCGGCTTTGGCGCTACCGCTTCAACCAGAGCATGAGTAGACGAGGTAACTGCCTG 217 Query 309 GACAATGCGCCAATGGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACCACG 368 ||||| | || |||||||| ||||||||||| | || ||||| |||||||| ||| | Sbjct 216 GACAACTCACCCATGGAGCGGTTGTTCCGCAGCCTCAAGACGGAATGGATACCAACCCAG 157 Query 369 GGTTACCGAACGGCTCAAGAAGCCCAGCGCGATATCAGCCAATTCTTAATGCATCGGTAC 428 ||||||| | ||| | || || | || ||| | | ||| | ||||| || ||| Sbjct 156 GGTTACCTGAGTGCTACGCAGGCACAACAGGACATCGGTCGGTTCCTGATGCAACGCTAC 97 Query 429 AACTGGATTCGCCCCCATCGATTCAACGGTGGGCTGGCGCCAGCTCGGGCCGAAGAAAAA 488 |||||| || || |||| ||||| || ||||| |||| || ||||| ||| | Sbjct 96 AACTGGCAACGGCCGCATCAGTTCAATGGCGGGCTACCGCCCGCCATTGCCGAGGAACGA 37 Query 489 CTTAACGTCGTGTCCGGGATTAGTTGACCACTACA 523 ||||| |||||||||||||||||||||||||| Sbjct 36 CTTAAACCAGTGTCCGGGATTAGTTGACCACTACA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1836391536293