Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001702.1
Length=226
Score E
Sequences producing significant alignments: (Bits) Value
seq501413 223 4e-56
seq191988 212 8e-53
seq293340 181 1e-43
seq186599 174 2e-41
>seq501413
Length=1507
Score = 223 bits (246), Expect = 4e-56
Identities = 183/223 (82%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60
|||||||||| ||||| || |||||| | | | |||||| ||| |||||||||||||| |
Sbjct 1181 CGACGATGAAGCGGAAGATGCCGTAGCAGAGCACGAACAGGCCGGACACGGCCATGGTCG 1122
Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120
| || |||||||||||| | | ||||||| | |||||||||||| ||||||| || |
Sbjct 1121 GCCGCGGCTTGCGCGAGTACAGCCAGAGGATCACGAACAGCGCCACCCCTTCCAGGGCGA 1062
Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180
|||| ||||||||||| |||||||||||||| || ||||| |||||| | || || || |
Sbjct 1061 ACTGATAGAGCTGCGAGGGATGGCGCGGCAGCTGGGCCGGATCGCTGTAGGGCGGAAAGA 1002
Query 181 CCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGC 223
||||||||| ||||| ||||| ||||||||||| | |||||
Sbjct 1001 TCATCGCCCAGGGCACGTCGGTGGGCTTGCCCCAGAGTTCGGC 959
Score = 205 bits (226), Expect = 1e-50
Identities = 161/193 (83%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 34 CGAACATGCCCGACACGGCCATGGTTGGGCGTGGCTTGCGCGAGAAGATGTAGAGGATAA 93
|||||| ||| |||||||||||||| || || |||||||||||| | | ||||||| |
Sbjct 945 CGAACAGGCCGGACACGGCCATGGTCGGCCGCGGCTTGCGCGAGTACAGCCAGAGGATCA 886
Query 94 GGAACAGCGCCACACCTTCCAACGCAAACTGGTAGAGCTGCGACGGATGGCGCGGCAGTT 153
|||||||||||| |||||||| || ||||||||||||||||| |||||||| ||||| |
Sbjct 885 CGAACAGCGCCACCCCTTCCAAGGCGAACTGGTAGAGCTGCGAGGGATGGCGTGGCAGCT 826
Query 154 GTGCCGGGTCGCTGAACGGGGGGAACACCATCGCCCACGGCACATCGGTCGGCTTGCCCC 213
| ||||| |||||| | || || || | ||||||||| ||||| ||||| ||||||||||
Sbjct 825 GGGCCGGATCGCTGTAGGGCGGAAAGATCATCGCCCAGGGCACGTCGGTGGGCTTGCCCC 766
Query 214 ACAACTCGGCGTT 226
| | ||||||||
Sbjct 765 AGAGTTCGGCGTT 753
>seq191988
Length=213
Score = 212 bits (234), Expect = 8e-53
Identities = 167/200 (84%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60
||||||||||||||||||| |||||||||||||||||||| || || || ||||||||||
Sbjct 14 CGACGATGAAACGGAAAATACCGTAGAACAACGCGAACATTCCGGAAACTGCCATGGTTG 73
Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120
| || || ||||||||| | | |||| || | |||||| ||||| ||||| | || |
Sbjct 74 GCCGAGGTTTGCGCGAGTACAGCCAGAGAATCACGAACAGTGCCACGCCTTCGAGGGCGA 133
Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180
|||| || |||||||| || |||||||||| || ||||||||||||||||| ||||| |
Sbjct 134 ACTGATACAGCTGCGAAGGGTGGCGCGGCAACTGCGCCGGGTCGCTGAACGGCGGGAAGA 193
Query 181 CCATCGCCCACGGCACATCG 200
||||||||| |||||||||
Sbjct 194 TCATCGCCCATGGCACATCG 213
>seq293340
Length=1154
Score = 181 bits (200), Expect = 1e-43
Identities = 176/226 (78%), Gaps = 9/226 (4%)
Strand=Plus/Minus
Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60
|||||||||||||||| || |||||| ||| |||||||| ||| || || |||||||| |
Sbjct 265 CGACGATGAAACGGAAGATGCCGTAGCACACCGCGAACAGGCCGGAGACCGCCATGGTCG 206
Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120
|||| || || |||||| |||| | ||||| | |||||||||||| ||||||| || |
Sbjct 205 GGCGCGGTTTACGCGAGTAGATCCACAGGATGACGAACAGCGCCACGCCTTCCAGAGCGA 146
Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180
||||||| ||||||||||| ||||||||||| ||| ||| | || ||||
Sbjct 145 ACTGGTACAGCTGCGACGGGTGGCGCGGCAG------CGGCCCGC---CAGTCGGAAACA 95
Query 181 CCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226
|||| ||||| ||||| || | ||||||||||| |||||| ||
Sbjct 94 CCATGGCCCATGGCACGTCACTGACCTTGCCCCACAGCTCGGCATT 49
>seq186599
Length=3077
Score = 174 bits (192), Expect = 2e-41
Identities = 166/212 (78%), Gaps = 9/212 (4%)
Strand=Plus/Plus
Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60
||||||| || ||||| || |||||| ||| |||||||| ||| || || |||||||| |
Sbjct 410 CGACGATAAAGCGGAAGATGCCGTAGCACACCGCGAACAGGCCGGAGACCGCCATGGTCG 469
Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120
|||| || ||||||||| |||| | ||||| | |||||||||||| ||||||| || |
Sbjct 470 GGCGCGGTTTGCGCGAGTAGATCCACAGGATGACGAACAGCGCCACGCCTTCCAGGGCGA 529
Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180
||||||| ||||||||||| ||||||||||| ||| ||| | |||||||
Sbjct 530 ACTGGTACAGCTGCGACGGGTGGCGCGGCAG------CGGCCCGC---CAGTCGGGAACA 580
Query 181 CCATCGCCCACGGCACATCGGTCGGCTTGCCC 212
|||| ||||||||||| ||| | |||||||
Sbjct 581 CCATGGCCCACGGCACGTCGCTGACCTTGCCC 612
Score = 86.0 bits (94), Expect = 8e-15
Identities = 85/110 (77%), Gaps = 9/110 (8%)
Strand=Plus/Plus
Query 117 GCAAACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGG 176
|| ||||| |||||||||||||||||||||||| |||| ||| | | ||||
Sbjct 615 GCGAACTGATAGAGCTGCGACGGATGGCGCGGCT------CCGGCCCGCCG---GTGGGG 665
Query 177 AACACCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226
|||||||| ||||| ||||| ||| | ||||||||||| |||||| ||
Sbjct 666 AACACCATGGCCCAGGGCACGTCGCTGACCTTGCCCCACAGCTCGGCATT 715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620822584785
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |