Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001702.1 Length=226 Score E Sequences producing significant alignments: (Bits) Value seq501413 223 4e-56 seq191988 212 8e-53 seq293340 181 1e-43 seq186599 174 2e-41 >seq501413 Length=1507 Score = 223 bits (246), Expect = 4e-56 Identities = 183/223 (82%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60 |||||||||| ||||| || |||||| | | | |||||| ||| |||||||||||||| | Sbjct 1181 CGACGATGAAGCGGAAGATGCCGTAGCAGAGCACGAACAGGCCGGACACGGCCATGGTCG 1122 Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120 | || |||||||||||| | | ||||||| | |||||||||||| ||||||| || | Sbjct 1121 GCCGCGGCTTGCGCGAGTACAGCCAGAGGATCACGAACAGCGCCACCCCTTCCAGGGCGA 1062 Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180 |||| ||||||||||| |||||||||||||| || ||||| |||||| | || || || | Sbjct 1061 ACTGATAGAGCTGCGAGGGATGGCGCGGCAGCTGGGCCGGATCGCTGTAGGGCGGAAAGA 1002 Query 181 CCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGC 223 ||||||||| ||||| ||||| ||||||||||| | ||||| Sbjct 1001 TCATCGCCCAGGGCACGTCGGTGGGCTTGCCCCAGAGTTCGGC 959 Score = 205 bits (226), Expect = 1e-50 Identities = 161/193 (83%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34 CGAACATGCCCGACACGGCCATGGTTGGGCGTGGCTTGCGCGAGAAGATGTAGAGGATAA 93 |||||| ||| |||||||||||||| || || |||||||||||| | | ||||||| | Sbjct 945 CGAACAGGCCGGACACGGCCATGGTCGGCCGCGGCTTGCGCGAGTACAGCCAGAGGATCA 886 Query 94 GGAACAGCGCCACACCTTCCAACGCAAACTGGTAGAGCTGCGACGGATGGCGCGGCAGTT 153 |||||||||||| |||||||| || ||||||||||||||||| |||||||| ||||| | Sbjct 885 CGAACAGCGCCACCCCTTCCAAGGCGAACTGGTAGAGCTGCGAGGGATGGCGTGGCAGCT 826 Query 154 GTGCCGGGTCGCTGAACGGGGGGAACACCATCGCCCACGGCACATCGGTCGGCTTGCCCC 213 | ||||| |||||| | || || || | ||||||||| ||||| ||||| |||||||||| Sbjct 825 GGGCCGGATCGCTGTAGGGCGGAAAGATCATCGCCCAGGGCACGTCGGTGGGCTTGCCCC 766 Query 214 ACAACTCGGCGTT 226 | | |||||||| Sbjct 765 AGAGTTCGGCGTT 753 >seq191988 Length=213 Score = 212 bits (234), Expect = 8e-53 Identities = 167/200 (84%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60 ||||||||||||||||||| |||||||||||||||||||| || || || |||||||||| Sbjct 14 CGACGATGAAACGGAAAATACCGTAGAACAACGCGAACATTCCGGAAACTGCCATGGTTG 73 Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120 | || || ||||||||| | | |||| || | |||||| ||||| ||||| | || | Sbjct 74 GCCGAGGTTTGCGCGAGTACAGCCAGAGAATCACGAACAGTGCCACGCCTTCGAGGGCGA 133 Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180 |||| || |||||||| || |||||||||| || ||||||||||||||||| ||||| | Sbjct 134 ACTGATACAGCTGCGAAGGGTGGCGCGGCAACTGCGCCGGGTCGCTGAACGGCGGGAAGA 193 Query 181 CCATCGCCCACGGCACATCG 200 ||||||||| ||||||||| Sbjct 194 TCATCGCCCATGGCACATCG 213 >seq293340 Length=1154 Score = 181 bits (200), Expect = 1e-43 Identities = 176/226 (78%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60 |||||||||||||||| || |||||| ||| |||||||| ||| || || |||||||| | Sbjct 265 CGACGATGAAACGGAAGATGCCGTAGCACACCGCGAACAGGCCGGAGACCGCCATGGTCG 206 Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120 |||| || || |||||| |||| | ||||| | |||||||||||| ||||||| || | Sbjct 205 GGCGCGGTTTACGCGAGTAGATCCACAGGATGACGAACAGCGCCACGCCTTCCAGAGCGA 146 Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180 ||||||| ||||||||||| ||||||||||| ||| ||| | || |||| Sbjct 145 ACTGGTACAGCTGCGACGGGTGGCGCGGCAG------CGGCCCGC---CAGTCGGAAACA 95 Query 181 CCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226 |||| ||||| ||||| || | ||||||||||| |||||| || Sbjct 94 CCATGGCCCATGGCACGTCACTGACCTTGCCCCACAGCTCGGCATT 49 >seq186599 Length=3077 Score = 174 bits (192), Expect = 2e-41 Identities = 166/212 (78%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60 ||||||| || ||||| || |||||| ||| |||||||| ||| || || |||||||| | Sbjct 410 CGACGATAAAGCGGAAGATGCCGTAGCACACCGCGAACAGGCCGGAGACCGCCATGGTCG 469 Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120 |||| || ||||||||| |||| | ||||| | |||||||||||| ||||||| || | Sbjct 470 GGCGCGGTTTGCGCGAGTAGATCCACAGGATGACGAACAGCGCCACGCCTTCCAGGGCGA 529 Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180 ||||||| ||||||||||| ||||||||||| ||| ||| | ||||||| Sbjct 530 ACTGGTACAGCTGCGACGGGTGGCGCGGCAG------CGGCCCGC---CAGTCGGGAACA 580 Query 181 CCATCGCCCACGGCACATCGGTCGGCTTGCCC 212 |||| ||||||||||| ||| | ||||||| Sbjct 581 CCATGGCCCACGGCACGTCGCTGACCTTGCCC 612 Score = 86.0 bits (94), Expect = 8e-15 Identities = 85/110 (77%), Gaps = 9/110 (8%) Strand=Plus/Plus Query 117 GCAAACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGG 176 || ||||| |||||||||||||||||||||||| |||| ||| | | |||| Sbjct 615 GCGAACTGATAGAGCTGCGACGGATGGCGCGGCT------CCGGCCCGCCG---GTGGGG 665 Query 177 AACACCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226 |||||||| ||||| ||||| ||| | ||||||||||| |||||| || Sbjct 666 AACACCATGGCCCAGGGCACGTCGCTGACCTTGCCCCACAGCTCGGCATT 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620822584785