Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001745.1
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
seq196683 163 4e-38
seq482488 122 1e-25
seq84648 122 1e-25
seq155644 82.4 1e-13
>seq196683
Length=1250
Score = 163 bits (180), Expect = 4e-38
Identities = 212/286 (74%), Gaps = 18/286 (6%)
Strand=Plus/Plus
Query 2 CGGGGCCACGGCCCCAATGCGGT--ACCTGGGGCACCAACCGCCATTGATCGGGCACAGA 59
||| ||| |||| || | ||| | ||| ||||| |||||||| | | || | || |
Sbjct 795 CGGCGCCTCGGCACCGAAGCGCTCTACC--GGGCAGCAACCGCCTTGCAGCGCGTACCAA 852
Query 60 TCCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGC 119
|||| ||||||||||| || |||||||||||||| || || ||| |||| |||||||
Sbjct 853 TCCAACCGCGTGCCGGCGTATACCACCGGGGCGCCGGGCTGGTTGGCGTCCAACGTGCGC 912
Query 120 GCGGTGGCACAGCCGGTGAGTTGCA-----GCG-CCATCAAGAG-CAGC---AGTGCTTT 169
|||||||| |||||| ||||||| ||| || | ||| |||| | || |
Sbjct 913 GCGGTGGCGCAGCCGCCCAGTTGCAGGCAGGCGAGCAGAACGAGCCAGCCCGCGAGC-CT 971
Query 170 ATTCATCGCC---GCCCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGT 226
|||||||||| | ||||| || || ||||| || ||||||||||||||||| ||||
Sbjct 972 ATTCATCGCCACTGTTGAGGTGATGTTCGCCCCAGCGCGGCAGCATGTCCTGGGGGATGT 1031
Query 227 TCAACAGGTTGAGAATGCGCGCCACCACAAAGTCCACCAGGTCATC 272
||| ||||| |||||||| ||||| ||||| | |||||||||
Sbjct 1032 TCAGGCAATTGAGGATGCGCGCGACCACGAAGTCGATCAGGTCATC 1077
>seq482488
Length=443
Score = 122 bits (134), Expect = 1e-25
Identities = 137/179 (77%), Gaps = 12/179 (7%)
Strand=Plus/Plus
Query 60 TCCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGC 119
||||| ||||||||||| |||||||| || ||||| || || ||| ||||| || |||
Sbjct 265 TCCAGCCGCGTGCCGGCGTACACCACGGGTGCGCCGGGCTGGTTGGCGTCCAGGGTACGC 324
Query 120 GCGGTGGCACAGCCGGTGAGTTGCA-----GCG-CCATCAAGAG-CAGCAG--TGCTTTA 170
|||||||| |||||| |||||||| ||| || || ||| |||| | | | ||
Sbjct 325 GCGGTGGCGCAGCCGCCGAGTTGCAGGCAGGCGAGCAGCAGGAGCCAGCCGGAGGTTCTA 384
Query 171 TTCATCGCCGC---CCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGT 226
|||||||||| ||||| ||||| ||||| || ||||||||||||||||| ||||
Sbjct 385 GTCATCGCCGCTGTTGAGGTGATGCTCGCCCCAGCGCGGCAGCATGTCCTGGGGGATGT 443
>seq84648
Length=3156
Score = 122 bits (134), Expect = 1e-25
Identities = 196/286 (69%), Gaps = 17/286 (6%)
Strand=Plus/Plus
Query 2 CGGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGATC 61
||| ||| |||| || | ||| | | ||||| ||||| || | | || | || ||
Sbjct 2781 CGGCGCCTCGGCGCCGAAGCGCTCCACCGGGCAGCAACCACCCTGCAGCGCGTACCAGTC 2840
Query 62 CAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCGC 121
||| ||||||||||| ||||||||||| ||||| || || ||||||||| || || ||
Sbjct 2841 CAGCCGCGTGCCGGCGTACACCACCGGCGCGCCGGGCTGGTTGGCATCCAGGGTACGTGC 2900
Query 122 GGTGGCACAGCCGGTGAGTTGCAGCGC------------CATCAAGAGCAGCAGTGCTTT 169
|| || |||||| |||||||| || || |
Sbjct 2901 AGTAGCGCAGCCGCCCAGTTGCAG-GCAGNNNNNNNNNNNNNNNNNNNNNNNNNNGCCT- 2958
Query 170 ATTCATCGCCGCCC---AGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGT 226
|||||||||| | ||||| ||||| ||||| || ||||||||||||||||| ||||
Sbjct 2959 ATTCATCGCCACTGTTGAGGTGATGCTCGCCCCAGCGCGGCAGCATGTCCTGGGGGATGT 3018
Query 227 TCAACAGGTTGAGAATGCGCGCCACCACAAAGTCCACCAGGTCATC 272
||| ||||| |||||||| ||||| || || |||||||||||
Sbjct 3019 TCAGGCAATTGAGGATGCGCGCGACCACGAAATCGACCAGGTCATC 3064
>seq155644
Length=204
Score = 82.4 bits (90), Expect = 1e-13
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 190 TGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGAATGCGCGCC 249
|| || ||||| || ||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 203 TGTTCGCCCCAGCGCGGCAGCATGTCCTGGGGGATGTTCAGGCAATTGAGGATGCGCGCG 144
Query 250 ACCACAAAGTCCACCAGGTCATC 272
||||| ||||| | |||||||||
Sbjct 143 ACCACGAAGTCGATCAGGTCATC 121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 770456746246
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |