Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001745.1 Length=273 Score E Sequences producing significant alignments: (Bits) Value seq196683 163 4e-38 seq482488 122 1e-25 seq84648 122 1e-25 seq155644 82.4 1e-13 >seq196683 Length=1250 Score = 163 bits (180), Expect = 4e-38 Identities = 212/286 (74%), Gaps = 18/286 (6%) Strand=Plus/Plus Query 2 CGGGGCCACGGCCCCAATGCGGT--ACCTGGGGCACCAACCGCCATTGATCGGGCACAGA 59 ||| ||| |||| || | ||| | ||| ||||| |||||||| | | || | || | Sbjct 795 CGGCGCCTCGGCACCGAAGCGCTCTACC--GGGCAGCAACCGCCTTGCAGCGCGTACCAA 852 Query 60 TCCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGC 119 |||| ||||||||||| || |||||||||||||| || || ||| |||| ||||||| Sbjct 853 TCCAACCGCGTGCCGGCGTATACCACCGGGGCGCCGGGCTGGTTGGCGTCCAACGTGCGC 912 Query 120 GCGGTGGCACAGCCGGTGAGTTGCA-----GCG-CCATCAAGAG-CAGC---AGTGCTTT 169 |||||||| |||||| ||||||| ||| || | ||| |||| | || | Sbjct 913 GCGGTGGCGCAGCCGCCCAGTTGCAGGCAGGCGAGCAGAACGAGCCAGCCCGCGAGC-CT 971 Query 170 ATTCATCGCC---GCCCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGT 226 |||||||||| | ||||| || || ||||| || ||||||||||||||||| |||| Sbjct 972 ATTCATCGCCACTGTTGAGGTGATGTTCGCCCCAGCGCGGCAGCATGTCCTGGGGGATGT 1031 Query 227 TCAACAGGTTGAGAATGCGCGCCACCACAAAGTCCACCAGGTCATC 272 ||| ||||| |||||||| ||||| ||||| | ||||||||| Sbjct 1032 TCAGGCAATTGAGGATGCGCGCGACCACGAAGTCGATCAGGTCATC 1077 >seq482488 Length=443 Score = 122 bits (134), Expect = 1e-25 Identities = 137/179 (77%), Gaps = 12/179 (7%) Strand=Plus/Plus Query 60 TCCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGC 119 ||||| ||||||||||| |||||||| || ||||| || || ||| ||||| || ||| Sbjct 265 TCCAGCCGCGTGCCGGCGTACACCACGGGTGCGCCGGGCTGGTTGGCGTCCAGGGTACGC 324 Query 120 GCGGTGGCACAGCCGGTGAGTTGCA-----GCG-CCATCAAGAG-CAGCAG--TGCTTTA 170 |||||||| |||||| |||||||| ||| || || ||| |||| | | | || Sbjct 325 GCGGTGGCGCAGCCGCCGAGTTGCAGGCAGGCGAGCAGCAGGAGCCAGCCGGAGGTTCTA 384 Query 171 TTCATCGCCGC---CCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGT 226 |||||||||| ||||| ||||| ||||| || ||||||||||||||||| |||| Sbjct 385 GTCATCGCCGCTGTTGAGGTGATGCTCGCCCCAGCGCGGCAGCATGTCCTGGGGGATGT 443 >seq84648 Length=3156 Score = 122 bits (134), Expect = 1e-25 Identities = 196/286 (69%), Gaps = 17/286 (6%) Strand=Plus/Plus Query 2 CGGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGATC 61 ||| ||| |||| || | ||| | | ||||| ||||| || | | || | || || Sbjct 2781 CGGCGCCTCGGCGCCGAAGCGCTCCACCGGGCAGCAACCACCCTGCAGCGCGTACCAGTC 2840 Query 62 CAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCGC 121 ||| ||||||||||| ||||||||||| ||||| || || ||||||||| || || || Sbjct 2841 CAGCCGCGTGCCGGCGTACACCACCGGCGCGCCGGGCTGGTTGGCATCCAGGGTACGTGC 2900 Query 122 GGTGGCACAGCCGGTGAGTTGCAGCGC------------CATCAAGAGCAGCAGTGCTTT 169 || || |||||| |||||||| || || | Sbjct 2901 AGTAGCGCAGCCGCCCAGTTGCAG-GCAGNNNNNNNNNNNNNNNNNNNNNNNNNNGCCT- 2958 Query 170 ATTCATCGCCGCCC---AGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGT 226 |||||||||| | ||||| ||||| ||||| || ||||||||||||||||| |||| Sbjct 2959 ATTCATCGCCACTGTTGAGGTGATGCTCGCCCCAGCGCGGCAGCATGTCCTGGGGGATGT 3018 Query 227 TCAACAGGTTGAGAATGCGCGCCACCACAAAGTCCACCAGGTCATC 272 ||| ||||| |||||||| ||||| || || ||||||||||| Sbjct 3019 TCAGGCAATTGAGGATGCGCGCGACCACGAAATCGACCAGGTCATC 3064 >seq155644 Length=204 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 190 TGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGAATGCGCGCC 249 || || ||||| || ||||||||||||||||| ||||||| ||||| |||||||| Sbjct 203 TGTTCGCCCCAGCGCGGCAGCATGTCCTGGGGGATGTTCAGGCAATTGAGGATGCGCGCG 144 Query 250 ACCACAAAGTCCACCAGGTCATC 272 ||||| ||||| | ||||||||| Sbjct 143 ACCACGAAGTCGATCAGGTCATC 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770456746246