Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001757.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq106909 389 1e-105 seq209161 279 1e-72 seq132738 159 9e-37 seq218733 120 8e-25 seq8580 120 8e-25 >seq106909 Length=12099 Score = 389 bits (430), Expect = 1e-105 Identities = 334/420 (80%), Gaps = 0/420 (0%) Strand=Plus/Minus Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60 ||||||| || ||||||||||||||||| |||| |||||||||| |||||||||||||| Sbjct 7303 CGACGTTGGGACTCTGGAAGCCGACGTCGAAGATATGGAAGCCCAGGTGCATGATCTTCT 7244 Query 61 GGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNN 120 |||| |||||||| || |||||||| || ||||| ||||| |||||||||||| || Sbjct 7243 GGTCGAGGTGCAGATAAGGGTAGTTGCCATCCACCGGCAGGCTCGGCGCCAGCTTGACCA 7184 Query 121 NNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGC 180 ||| ||||||||||| || ||||||||||||||||||| || Sbjct 7183 CGCCCACCAGCATCAGCGGCGCGACTTCACCGGCGGCCCGGGCCACGGCGAGGATCAGGC 7124 Query 181 CGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTTGG 240 ||||| |||| |||||||| ||||| ||||| || | ||||| || || |||||| Sbjct 7123 CGGTCATCATCGCCGGGCTGGCCATCGGCAACACCACGCGCCACAAGGTTTCCACCTTGG 7064 Query 241 TCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTT 300 ||||||||| |||||| |||||||| |||| | || || ||||||| || |||||| | Sbjct 7063 TCGCGCCCAGGGCCAGGGAGCCCTCACGCAAAGCCCGTGGGATACGCGACAGACCTTCCT 7004 Query 301 CGGTGGCCACGATCACCACCGGAACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCA 360 ||||||| |||||||||||||| || || ||||| |||||||||| ||| |||||||||| Sbjct 7003 CGGTGGCGACGATCACCACCGGCACCGCGAGCAGCGCCAGGGTCAGCGAGGCCCACAGCA 6944 Query 361 GGTCCGGGGTACCCAAGGTCGGCGCCGGCAGTGCTTCGGGGAAGACCAAGCGGTCTATCG 420 || | ||||| || ||||||||||||||| ||||| ||||||| || |||||| |||| Sbjct 6943 GGCCGGGGGTGCCGAAGGTCGGCGCCGGCGCGGCTTCCGGGAAGAACAGGCGGTCGATCG 6884 >seq209161 Length=400 Score = 279 bits (308), Expect = 1e-72 Identities = 226/281 (80%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 3 ACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCTGG 62 ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 282 ACGTTGGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAGGTGCATGATCTTCTGA 223 Query 63 TCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNNNN 122 ||||||||||| ||||||||||| ||||||| |||||||| ||||||||||| || Sbjct 222 TCCAGGTGCAGATAGGGGTAGTTGCCGTCCAGCGGCAGCGAGGGCGCCAGCTTGACCACC 163 Query 123 NNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGCCG 182 |||||| || ||||| |||||||||||||| ||||||| ||| Sbjct 162 CCCACCAGCATCAGCGGCGCCACCTCGCCGGCGGCGCGGGCCACGGCCAGGATCAGCCCG 103 Query 183 GTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTTGGTC 242 ||| |||| ||||| || |||| |||| || | |||||||||||||||||||| |||| Sbjct 102 GTCATCATCGCCGGACTGGCCAGCGGCAGCACCACCTTCCACAGCGTCTCGGCCTGGGTC 43 Query 243 GCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAAT 283 ||||||| ||||| ||||||||||| | | | || ||||| Sbjct 42 GCGCCCAGCGCCAGGGAGCCCTCGCGGATGCTGCGGGGAAT 2 >seq132738 Length=818 Score = 159 bits (176), Expect = 9e-37 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 151 CGACGTTGGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAGGTGCATGATCTTCT 92 Query 61 GGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCAC 118 |||| ||||||||||| || ||||| || ||||| ||||| |||||||||||| || Sbjct 91 GGTCGAGGTGCAGGTAAGGATAGTTGCCATCCACCGGCAGGCTCGGCGCCAGCTTGAC 34 >seq218733 Length=499 Score = 120 bits (132), Expect = 8e-25 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 221 CCACAGCGTCTCGGCCTTGGTCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGG 280 |||||| || || |||| || || |||| |||||||| |||| |||| ||| || Sbjct 32 CCACAGGGTTTCTGCCTGCGTTGCCCCCAGCGCCAGCGATCCCTGACGCAGCGTATCGGG 91 Query 281 AATACGCGCCAAACCTTCTTCGGTGGCCACGATCACCACCGGAACAGCCAGCAGTGCCAG 340 || || | ||| || ||||| || ||||| ||||||||||| | | |||||||||||| Sbjct 92 TATCCGTGACAACCCCTCTTCTGTCGCCACAATCACCACCGGCATCGTCAGCAGTGCCAG 151 Query 341 GGTCAACGATGCCCACAGCAGGTCCGGGGTACCCAAGGTCGGCGCCGGCAGTGC 394 || | ||| |||||||||||| | || ||||| ||||| || |||||| || Sbjct 152 CGTTAGCGACGCCCACAGCAGGCCTGGCGTACCAAAGGTTGGGTTCGGCAGCGC 205 >seq8580 Length=6920 Score = 120 bits (132), Expect = 8e-25 Identities = 236/356 (66%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 6 TTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCTGGTCC 65 ||||||||||| || | | || || || |||||||||| ||||| | ||| | ||| Sbjct 1373 TTCGGGCTCTGAAACGCCAGATCGTAAATCTGGAAGCCCAGATGCATAAACTTGCGATCC 1432 Query 66 AGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNNNNNNN 125 || ||||| || || | | |||| || |||||| ||| ||| || || Sbjct 1433 AGATGCAGATAAGGAAACACCGCGTCTACCGGCAGCTCCGGTACCATTTTTACTACCCCC 1492 Query 126 NNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGCCGGTC 185 || ||| ||||| || || ||||| || ||||||| |||||| Sbjct 1493 ACCAGCATCAGCGGTGCGGTTTCCCCGGCCGCCCGCGCCACCGCCAGGATCAGACCGGTC 1552 Query 186 GTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTTGGTCGCG 245 ||| || || ||||| |||| || | |||||||| || || |||| || ||| Sbjct 1553 AGCATCGCGGGCACCGCCATAGGCAGCACCACATTCCACAGGGTTTCCGCCTGCGTTGCG 1612 Query 246 CCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTTCGGTG 305 |||| ||||||| |||| |||| | |||||||| | || || |||||||| Sbjct 1613 CCCAGCGCCAGCGCCCCCTGTCGCAGACTGTTGGGAATACGGGACAGCCCCTCTTCGGTC 1672 Query 306 GCCACGATCACCACCGGAACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCAG 361 || || || |||||||| | | ||| | ||||| |||| || ||||||||||| Sbjct 1673 GCGACAATGACCACCGGCAGCGTCAGTAACGCCAGCGTCAGTGAGGCCCACAGCAG 1728 Score = 104 bits (114), Expect = 6e-20 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 179 GCCGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTT 238 ||||||| ||| || || ||||| |||| || | |||||||| || || |||| Sbjct 1734 GCCGGTCAGCATCGCGGGCACCGCCATAGGCAGCACCACATTCCACAGGGTTTCCGCCTG 1793 Query 239 GGTCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTC 298 || ||||||| |||||||| |||| |||| | |||||||| | || || || Sbjct 1794 CGTTGCGCCCAGCGCCAGCGAACCCTGTCGCAGACTGTTGGGAATACGGGACAGCCCCTC 1853 Query 299 TTCGGTGGCCACGATCACCACCGGAACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAG 358 |||||| || || || |||||||| | | ||| | ||||| |||| || |||||||| Sbjct 1854 TTCGGTCGCGACAATGACCACCGGCAGCGTCAGTAACGCCAGCGTCAGTGAGGCCCACAG 1913 Query 359 CAGGTCCGGGGTACCCAAGGTCGGCGCCGGCAGTGCTTCGGGGAAGA 405 ||| | || || || || ||||| ||||| || || ||||| Sbjct 1914 CAGCCCTGGCGTGCCAAACGTCGGATTGGGCAGCGCGCTGGCGAAGA 1960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1235073815168