Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001757.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq106909 389 1e-105
seq209161 279 1e-72
seq132738 159 9e-37
seq218733 120 8e-25
seq8580 120 8e-25
>seq106909
Length=12099
Score = 389 bits (430), Expect = 1e-105
Identities = 334/420 (80%), Gaps = 0/420 (0%)
Strand=Plus/Minus
Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60
||||||| || ||||||||||||||||| |||| |||||||||| ||||||||||||||
Sbjct 7303 CGACGTTGGGACTCTGGAAGCCGACGTCGAAGATATGGAAGCCCAGGTGCATGATCTTCT 7244
Query 61 GGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNN 120
|||| |||||||| || |||||||| || ||||| ||||| |||||||||||| ||
Sbjct 7243 GGTCGAGGTGCAGATAAGGGTAGTTGCCATCCACCGGCAGGCTCGGCGCCAGCTTGACCA 7184
Query 121 NNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGC 180
||| ||||||||||| || ||||||||||||||||||| ||
Sbjct 7183 CGCCCACCAGCATCAGCGGCGCGACTTCACCGGCGGCCCGGGCCACGGCGAGGATCAGGC 7124
Query 181 CGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTTGG 240
||||| |||| |||||||| ||||| ||||| || | ||||| || || ||||||
Sbjct 7123 CGGTCATCATCGCCGGGCTGGCCATCGGCAACACCACGCGCCACAAGGTTTCCACCTTGG 7064
Query 241 TCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTT 300
||||||||| |||||| |||||||| |||| | || || ||||||| || |||||| |
Sbjct 7063 TCGCGCCCAGGGCCAGGGAGCCCTCACGCAAAGCCCGTGGGATACGCGACAGACCTTCCT 7004
Query 301 CGGTGGCCACGATCACCACCGGAACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCA 360
||||||| |||||||||||||| || || ||||| |||||||||| ||| ||||||||||
Sbjct 7003 CGGTGGCGACGATCACCACCGGCACCGCGAGCAGCGCCAGGGTCAGCGAGGCCCACAGCA 6944
Query 361 GGTCCGGGGTACCCAAGGTCGGCGCCGGCAGTGCTTCGGGGAAGACCAAGCGGTCTATCG 420
|| | ||||| || ||||||||||||||| ||||| ||||||| || |||||| ||||
Sbjct 6943 GGCCGGGGGTGCCGAAGGTCGGCGCCGGCGCGGCTTCCGGGAAGAACAGGCGGTCGATCG 6884
>seq209161
Length=400
Score = 279 bits (308), Expect = 1e-72
Identities = 226/281 (80%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 3 ACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCTGG 62
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 282 ACGTTGGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAGGTGCATGATCTTCTGA 223
Query 63 TCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNNNN 122
||||||||||| ||||||||||| ||||||| |||||||| ||||||||||| ||
Sbjct 222 TCCAGGTGCAGATAGGGGTAGTTGCCGTCCAGCGGCAGCGAGGGCGCCAGCTTGACCACC 163
Query 123 NNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGCCG 182
|||||| || ||||| |||||||||||||| ||||||| |||
Sbjct 162 CCCACCAGCATCAGCGGCGCCACCTCGCCGGCGGCGCGGGCCACGGCCAGGATCAGCCCG 103
Query 183 GTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTTGGTC 242
||| |||| ||||| || |||| |||| || | |||||||||||||||||||| ||||
Sbjct 102 GTCATCATCGCCGGACTGGCCAGCGGCAGCACCACCTTCCACAGCGTCTCGGCCTGGGTC 43
Query 243 GCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAAT 283
||||||| ||||| ||||||||||| | | | || |||||
Sbjct 42 GCGCCCAGCGCCAGGGAGCCCTCGCGGATGCTGCGGGGAAT 2
>seq132738
Length=818
Score = 159 bits (176), Expect = 9e-37
Identities = 106/118 (90%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 151 CGACGTTGGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAGGTGCATGATCTTCT 92
Query 61 GGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCAC 118
|||| ||||||||||| || ||||| || ||||| ||||| |||||||||||| ||
Sbjct 91 GGTCGAGGTGCAGGTAAGGATAGTTGCCATCCACCGGCAGGCTCGGCGCCAGCTTGAC 34
>seq218733
Length=499
Score = 120 bits (132), Expect = 8e-25
Identities = 131/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 221 CCACAGCGTCTCGGCCTTGGTCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGG 280
|||||| || || |||| || || |||| |||||||| |||| |||| ||| ||
Sbjct 32 CCACAGGGTTTCTGCCTGCGTTGCCCCCAGCGCCAGCGATCCCTGACGCAGCGTATCGGG 91
Query 281 AATACGCGCCAAACCTTCTTCGGTGGCCACGATCACCACCGGAACAGCCAGCAGTGCCAG 340
|| || | ||| || ||||| || ||||| ||||||||||| | | ||||||||||||
Sbjct 92 TATCCGTGACAACCCCTCTTCTGTCGCCACAATCACCACCGGCATCGTCAGCAGTGCCAG 151
Query 341 GGTCAACGATGCCCACAGCAGGTCCGGGGTACCCAAGGTCGGCGCCGGCAGTGC 394
|| | ||| |||||||||||| | || ||||| ||||| || |||||| ||
Sbjct 152 CGTTAGCGACGCCCACAGCAGGCCTGGCGTACCAAAGGTTGGGTTCGGCAGCGC 205
>seq8580
Length=6920
Score = 120 bits (132), Expect = 8e-25
Identities = 236/356 (66%), Gaps = 0/356 (0%)
Strand=Plus/Plus
Query 6 TTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCTGGTCC 65
||||||||||| || | | || || || |||||||||| ||||| | ||| | |||
Sbjct 1373 TTCGGGCTCTGAAACGCCAGATCGTAAATCTGGAAGCCCAGATGCATAAACTTGCGATCC 1432
Query 66 AGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNNNNNNN 125
|| ||||| || || | | |||| || |||||| ||| ||| || ||
Sbjct 1433 AGATGCAGATAAGGAAACACCGCGTCTACCGGCAGCTCCGGTACCATTTTTACTACCCCC 1492
Query 126 NNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGCCGGTC 185
|| ||| ||||| || || ||||| || ||||||| ||||||
Sbjct 1493 ACCAGCATCAGCGGTGCGGTTTCCCCGGCCGCCCGCGCCACCGCCAGGATCAGACCGGTC 1552
Query 186 GTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTTGGTCGCG 245
||| || || ||||| |||| || | |||||||| || || |||| || |||
Sbjct 1553 AGCATCGCGGGCACCGCCATAGGCAGCACCACATTCCACAGGGTTTCCGCCTGCGTTGCG 1612
Query 246 CCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTTCGGTG 305
|||| ||||||| |||| |||| | |||||||| | || || ||||||||
Sbjct 1613 CCCAGCGCCAGCGCCCCCTGTCGCAGACTGTTGGGAATACGGGACAGCCCCTCTTCGGTC 1672
Query 306 GCCACGATCACCACCGGAACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCAG 361
|| || || |||||||| | | ||| | ||||| |||| || |||||||||||
Sbjct 1673 GCGACAATGACCACCGGCAGCGTCAGTAACGCCAGCGTCAGTGAGGCCCACAGCAG 1728
Score = 104 bits (114), Expect = 6e-20
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 179 GCCGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTT 238
||||||| ||| || || ||||| |||| || | |||||||| || || ||||
Sbjct 1734 GCCGGTCAGCATCGCGGGCACCGCCATAGGCAGCACCACATTCCACAGGGTTTCCGCCTG 1793
Query 239 GGTCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTC 298
|| ||||||| |||||||| |||| |||| | |||||||| | || || ||
Sbjct 1794 CGTTGCGCCCAGCGCCAGCGAACCCTGTCGCAGACTGTTGGGAATACGGGACAGCCCCTC 1853
Query 299 TTCGGTGGCCACGATCACCACCGGAACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAG 358
|||||| || || || |||||||| | | ||| | ||||| |||| || ||||||||
Sbjct 1854 TTCGGTCGCGACAATGACCACCGGCAGCGTCAGTAACGCCAGCGTCAGTGAGGCCCACAG 1913
Query 359 CAGGTCCGGGGTACCCAAGGTCGGCGCCGGCAGTGCTTCGGGGAAGA 405
||| | || || || || ||||| ||||| || || |||||
Sbjct 1914 CAGCCCTGGCGTGCCAAACGTCGGATTGGGCAGCGCGCTGGCGAAGA 1960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1235073815168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |