Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq103405 132 3e-29 seq138101 118 7e-25 seq63415 113 3e-23 seq474396 109 4e-22 seq274727 100 2e-19 seq324390 96.9 2e-18 seq511854 87.8 1e-15 seq251469 86.0 4e-15 seq188 86.0 4e-15 seq524056 82.4 5e-14 seq399499 80.6 2e-13 seq417335 77.0 2e-12 seq201268 77.0 2e-12 seq193620 77.0 2e-12 seq13245 75.2 8e-12 seq104566 73.4 3e-11 seq511386 71.6 1e-10 >seq103405 Length=3107 Score = 132 bits (146), Expect = 3e-29 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| ||||||||||||||||||| | | |||||||||||||||| |||| Sbjct 2658 TACCTTTTATCCTATGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTG 2599 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||||| ||| || | |||| | |||| || |||||||| ||| ||||||| |||| Sbjct 2598 CTTTCGCACCTGATCGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCCATTACACT 2541 >seq138101 Length=1814 Score = 118 bits (130), Expect = 7e-25 Identities = 111/140 (79%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1603 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGA 1662 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | | || ||||||| ||| ||| ||| |||||||||||| | Sbjct 1663 CTTTCGTCTCTGCTCGACTCGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCT 1722 Query 121 CAC-TACGATTTCCGACCGT 139 | ||| ||||| ||||| Sbjct 1723 TGCAGACGGTTTCCAACCGT 1742 Score = 105 bits (116), Expect = 5e-21 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 576 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGA 635 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| ||||||| | || ||| ||| |||||| | ||| |||| ||||||| Sbjct 636 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 693 >seq63415 Length=389 Score = 113 bits (124), Expect = 3e-23 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16 GAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATCTGCTC 75 |||||||||||||||||| || | |||||||||||||| ||||| |||||| | |||||| Sbjct 1 GAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTGCTC 60 Query 76 TAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTATCACTACGATTTCCGA 135 | ||| ||||||| |||||| |||||||| || ||||| | | ||||||||| Sbjct 61 GACATGTCTGTCTCGCAGTCAAGCGTGCTTTTGCCTTTACACTAACCGCATGATTTCCGA 120 Query 136 CC 137 || Sbjct 121 CC 122 >seq474396 Length=202 Score = 109 bits (120), Expect = 4e-22 Identities = 105/132 (80%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 10 TCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCAT 69 ||| |||||||||||||||||||| || | |||||||||||||||| || |||||| Sbjct 1 TCCTTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCGTCTTTCGACC 60 Query 70 CTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTATCAC-TACGA 128 ||| || | |||||| |||| || |||||| ||| |||||||||||| ||| |||| Sbjct 61 CTGATCGACTTGTTGGTCTCACAGTCAAGCGGGCTTATGCCATTGCACT-CCACGTACGG 119 Query 129 TTTCCGACCGTA 140 || || | |||| Sbjct 120 TTACCAAGCGTA 131 >seq274727 Length=2183 Score = 100 bits (110), Expect = 2e-19 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| | |||||||||||||| | || Sbjct 1794 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTAAGGCCGA 1735 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| |||| || | ||| || ||| || ||| || ||| |||| ||||||| | Sbjct 1734 CTTTCGTCTCTGTTCGCGCTGTCGCGCTCACAGTCAGGCGGGCTTATGCCTTTGCACTCA 1675 Query 120 TCACTACGATTTCCGACCG 138 || |||| |||||||| Sbjct 1674 ACA-GCCGATGTCCGACCG 1657 >seq324390 Length=462 Score = 96.9 bits (106), Expect = 2e-18 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||| | |||| | | ||||||||||||||| |||| Sbjct 39 TACCTTTTATCCTTTGAGCGATGGCACACCCATGCGCAACCACCGGATCACTATACCCTG 98 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||||| | | || | ||| |||| | |||||| | ||| ||| |||||||| Sbjct 99 CTTTCGCACCAGTTCGACCTGTGTGTCTCACTGTCAAGCTCGCTTATGCTATTGCACT 156 >seq511854 Length=389 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||||||||||||||| | | ||||||||||||||| || Sbjct 10 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATACCCGA 69 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| | | || |||| ||| | |||||| ||||||| |||||||| Sbjct 70 CTTTCGTCCCAGATCGGCCTGTTTGCCTCACTGTCAAGCTTGCTTTTGCTATTGCACT 127 >seq251469 Length=442 Score = 86.0 bits (94), Expect = 4e-15 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 14 TTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATCTGC 73 |||||||||||||||||||| || | ||||||||||||||| || |||||| | || Sbjct 1 TTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCAGC 60 Query 74 TCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 || | |||| |||| | ||||||| ||| ||| |||||||| Sbjct 61 TCGACTTGTCTGTCTCACTGTCAAGCAAGCTTATGCTATTGCACT 105 >seq188 Length=531 Score = 86.0 bits (94), Expect = 4e-15 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 16 GAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATCTGCTC 75 |||||||||||||||||| || | ||||||||||||||| || |||||| ||| || Sbjct 1 GAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGATC 60 Query 76 TAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTATCAC-TACGATTTCCG 134 | ||| |||| || ||||||| ||| ||| |||||||| ||| |||| || || Sbjct 61 GACCTGTATGTCTCACAGTCAAGCAAGCTTATGCTATTGCACT-CCACGTACGGTTACCA 119 Query 135 ACCGTA 140 | |||| Sbjct 120 AGCGTA 125 >seq524056 Length=5204 Score = 82.4 bits (90), Expect = 5e-14 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||||||||||||||||||||||||| ||| || |||||||||| | | Sbjct 1870 TAACTTTTATCCGTTGAGCGATGGCCCTTCCACTCAGCACCGTCGGATCACTAAGGCTGA 1929 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| ||||||| | || ||| ||| |||||| | ||| | || || |||| Sbjct 1930 CTTTCGTCTCTGCTCGATGGGTGAGTCTTGCAGTCAAGCTCCCTTCTACCTTTTCACT 1987 >seq399499 Length=6602 Score = 80.6 bits (88), Expect = 2e-13 Identities = 91/121 (75%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCG---GATCACTATGAC 57 || |||||||||||||||||| ||| |||||| || | ||||| |||||||| | | Sbjct 1054 TAACTTTTATCCGTTGAGCGACGGCTCTTCCACTC---GGCACCGTCCGATCACTAAGGC 1110 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||| Sbjct 1111 CGACTTTCGTCTCTGCTCGACGAGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 1170 Query 118 T 118 | Sbjct 1171 T 1171 >seq417335 Length=407 Score = 77.0 bits (84), Expect = 2e-12 Identities = 78/102 (76%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 16 GAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATCTGCTC 75 |||||||||||||||||| | |||||||||||||| | || |||||| |||||| Sbjct 1 GAGCGATGGCCCTTCCATGCGGTACCACCGGATCACTAAGCCCGACTTTCGTCCCTGCTC 60 Query 76 TAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | ||| ||||||| |||||| | ||| |||| || ||| Sbjct 61 GACCTGTCCGTCTCGCAGTCAAGCTCCCTTATGCCTTTACAC 102 >seq201268 Length=2082 Score = 77.0 bits (84), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCA--TAGCCACCGGATCACTATGACC 58 ||||||||||||||||||||| | |||||| || ||| ||||||||||| | || Sbjct 1642 TACCTTTTATCCGTTGAGCGACACCGCTTCCAC-CAGCTAGTG-CCGGATCACTAGGCCC 1585 Query 59 TGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||||||||| |||| | || |||| | | |||| | ||| |||| ||||||| Sbjct 1584 TGCTTTCGCATCCGCTCGACCCGTCAGTCTCACGGTGAAGCTCCCTTGTGCCCTTGCACT 1525 >seq193620 Length=378 Score = 77.0 bits (84), Expect = 2e-12 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||| ||| |||| || | ||||||||||| |||| Sbjct 49 TACCTTTTATCCGTTGAGCGACACCCCATCCACACAGAAGTGCCGGATCACTAGTCCCTG 108 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 |||||||| |||||| | || |||| || |||||| | ||| ||| || ||| Sbjct 109 CTTTCGCACCTGCTCGACCCGTCAGTCTCACAGTCAAGCCCTCTTCTGCACTTACAC 165 >seq13245 Length=471 Score = 75.2 bits (82), Expect = 8e-12 Identities = 78/100 (78%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 40 CCACCGGATCACTATGACCTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGC 99 |||||||||||||||| || |||||| ||||||| | |||| ||| ||| ||| || Sbjct 5 CCACCGGATCACTATGGCCGACTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGC 64 Query 100 ACACTTTTGCCATTGCACTATCACTA-CGATTTCCGACCG 138 ||| |||||||||||| || | ||||||||||||| Sbjct 65 TGGCTTCTGCCATTGCACT-CAACGACCGATTTCCGACCG 103 >seq104566 Length=738 Score = 73.4 bits (80), Expect = 3e-11 Identities = 87/118 (74%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| | |||||||| ||| || ||||||||| | || Sbjct 41 TAACTTTTATCCGTTGAGCGACGACCCTTCCACTCAGCACCGTTGGATCACTAAGGCCGA 100 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| ||||||| | || ||| | | |||||| | ||| |||| || |||| Sbjct 101 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGTAGTCAAGCTCCCTTCTGCCTTTACACT 158 >seq511386 Length=3368 Score = 71.6 bits (78), Expect = 1e-10 Identities = 90/121 (74%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCA---CCGGATCACTATGAC 57 ||||||||||||||||||||| | | |||||| ||| |||| ||||||||||| | Sbjct 41 TACCTTTTATCCGTTGAGCGACGCCGCTTCCA--CAT-GCCAGCGCCGGATCACTAGTTC 97 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| |||||| | ||| |||| || |||||| | ||| ||| || ||| Sbjct 98 CGACTTTCGTCCCTGCTCGACATGTCTGTCTCACAGTCAAGCTCCCTTGTGCACTTACAC 157 Query 118 T 118 | Sbjct 158 T 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350265430900