Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq103405 132 3e-29
seq138101 118 7e-25
seq63415 113 3e-23
seq474396 109 4e-22
seq274727 100 2e-19
seq324390 96.9 2e-18
seq511854 87.8 1e-15
seq251469 86.0 4e-15
seq188 86.0 4e-15
seq524056 82.4 5e-14
seq399499 80.6 2e-13
seq417335 77.0 2e-12
seq201268 77.0 2e-12
seq193620 77.0 2e-12
seq13245 75.2 8e-12
seq104566 73.4 3e-11
seq511386 71.6 1e-10
>seq103405
Length=3107
Score = 132 bits (146), Expect = 3e-29
Identities = 100/118 (85%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||| ||||||||||||||||||| | | |||||||||||||||| ||||
Sbjct 2658 TACCTTTTATCCTATGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTG 2599
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||||| ||| || | |||| | |||| || |||||||| ||| ||||||| ||||
Sbjct 2598 CTTTCGCACCTGATCGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCCATTACACT 2541
>seq138101
Length=1814
Score = 118 bits (130), Expect = 7e-25
Identities = 111/140 (79%), Gaps = 1/140 (1%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1603 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGA 1662
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| ||||||| | | || ||||||| ||| ||| ||| |||||||||||| |
Sbjct 1663 CTTTCGTCTCTGCTCGACTCGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCT 1722
Query 121 CAC-TACGATTTCCGACCGT 139
| ||| ||||| |||||
Sbjct 1723 TGCAGACGGTTTCCAACCGT 1742
Score = 105 bits (116), Expect = 5e-21
Identities = 94/118 (80%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 576 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGA 635
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||||
Sbjct 636 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 693
>seq63415
Length=389
Score = 113 bits (124), Expect = 3e-23
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 16 GAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATCTGCTC 75
|||||||||||||||||| || | |||||||||||||| ||||| |||||| | ||||||
Sbjct 1 GAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTGCTC 60
Query 76 TAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTATCACTACGATTTCCGA 135
| ||| ||||||| |||||| |||||||| || ||||| | | |||||||||
Sbjct 61 GACATGTCTGTCTCGCAGTCAAGCGTGCTTTTGCCTTTACACTAACCGCATGATTTCCGA 120
Query 136 CC 137
||
Sbjct 121 CC 122
>seq474396
Length=202
Score = 109 bits (120), Expect = 4e-22
Identities = 105/132 (80%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 10 TCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCAT 69
||| |||||||||||||||||||| || | |||||||||||||||| || ||||||
Sbjct 1 TCCTTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCGTCTTTCGACC 60
Query 70 CTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTATCAC-TACGA 128
||| || | |||||| |||| || |||||| ||| |||||||||||| ||| ||||
Sbjct 61 CTGATCGACTTGTTGGTCTCACAGTCAAGCGGGCTTATGCCATTGCACT-CCACGTACGG 119
Query 129 TTTCCGACCGTA 140
|| || | ||||
Sbjct 120 TTACCAAGCGTA 131
>seq274727
Length=2183
Score = 100 bits (110), Expect = 2e-19
Identities = 107/139 (77%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||||||||||||||||||||||| | |||||||||||||| | ||
Sbjct 1794 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTAAGGCCGA 1735
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119
|||||| |||| || | ||| || ||| || ||| || ||| |||| ||||||| |
Sbjct 1734 CTTTCGTCTCTGTTCGCGCTGTCGCGCTCACAGTCAGGCGGGCTTATGCCTTTGCACTCA 1675
Query 120 TCACTACGATTTCCGACCG 138
|| |||| ||||||||
Sbjct 1674 ACA-GCCGATGTCCGACCG 1657
>seq324390
Length=462
Score = 96.9 bits (106), Expect = 2e-18
Identities = 92/118 (78%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||| |||||||||||| | |||| | | ||||||||||||||| ||||
Sbjct 39 TACCTTTTATCCTTTGAGCGATGGCACACCCATGCGCAACCACCGGATCACTATACCCTG 98
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||||| | | || | ||| |||| | |||||| | ||| ||| ||||||||
Sbjct 99 CTTTCGCACCAGTTCGACCTGTGTGTCTCACTGTCAAGCTCGCTTATGCTATTGCACT 156
>seq511854
Length=389
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||| |||||||||||||||||||| | | ||||||||||||||| ||
Sbjct 10 TACCTTTTATCCTTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATACCCGA 69
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| | | || |||| ||| | |||||| ||||||| ||||||||
Sbjct 70 CTTTCGTCCCAGATCGGCCTGTTTGCCTCACTGTCAAGCTTGCTTTTGCTATTGCACT 127
>seq251469
Length=442
Score = 86.0 bits (94), Expect = 4e-15
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 14 TTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATCTGC 73
|||||||||||||||||||| || | ||||||||||||||| || |||||| | ||
Sbjct 1 TTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCAGC 60
Query 74 TCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|| | |||| |||| | ||||||| ||| ||| ||||||||
Sbjct 61 TCGACTTGTCTGTCTCACTGTCAAGCAAGCTTATGCTATTGCACT 105
>seq188
Length=531
Score = 86.0 bits (94), Expect = 4e-15
Identities = 96/126 (76%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 16 GAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATCTGCTC 75
|||||||||||||||||| || | ||||||||||||||| || |||||| ||| ||
Sbjct 1 GAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGATC 60
Query 76 TAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTATCAC-TACGATTTCCG 134
| ||| |||| || ||||||| ||| ||| |||||||| ||| |||| || ||
Sbjct 61 GACCTGTATGTCTCACAGTCAAGCAAGCTTATGCTATTGCACT-CCACGTACGGTTACCA 119
Query 135 ACCGTA 140
| ||||
Sbjct 120 AGCGTA 125
>seq524056
Length=5204
Score = 82.4 bits (90), Expect = 5e-14
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| ||||||||||||||||||||||||||||| ||| || |||||||||| | |
Sbjct 1870 TAACTTTTATCCGTTGAGCGATGGCCCTTCCACTCAGCACCGTCGGATCACTAAGGCTGA 1929
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| ||| |||||| | ||| | || || ||||
Sbjct 1930 CTTTCGTCTCTGCTCGATGGGTGAGTCTTGCAGTCAAGCTCCCTTCTACCTTTTCACT 1987
>seq399499
Length=6602
Score = 80.6 bits (88), Expect = 2e-13
Identities = 91/121 (75%), Gaps = 6/121 (5%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCG---GATCACTATGAC 57
|| |||||||||||||||||| ||| |||||| || | ||||| |||||||| | |
Sbjct 1054 TAACTTTTATCCGTTGAGCGACGGCTCTTCCACTC---GGCACCGTCCGATCACTAAGGC 1110
Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117
| |||||| ||||||| | || ||| ||| |||||| | ||| |||| ||||||
Sbjct 1111 CGACTTTCGTCTCTGCTCGACGAGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 1170
Query 118 T 118
|
Sbjct 1171 T 1171
>seq417335
Length=407
Score = 77.0 bits (84), Expect = 2e-12
Identities = 78/102 (76%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 16 GAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATCTGCTC 75
|||||||||||||||||| | |||||||||||||| | || |||||| ||||||
Sbjct 1 GAGCGATGGCCCTTCCATGCGGTACCACCGGATCACTAAGCCCGACTTTCGTCCCTGCTC 60
Query 76 TAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117
| ||| ||||||| |||||| | ||| |||| || |||
Sbjct 61 GACCTGTCCGTCTCGCAGTCAAGCTCCCTTATGCCTTTACAC 102
>seq201268
Length=2082
Score = 77.0 bits (84), Expect = 2e-12
Identities = 91/120 (76%), Gaps = 4/120 (3%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCA--TAGCCACCGGATCACTATGACC 58
||||||||||||||||||||| | |||||| || ||| ||||||||||| | ||
Sbjct 1642 TACCTTTTATCCGTTGAGCGACACCGCTTCCAC-CAGCTAGTG-CCGGATCACTAGGCCC 1585
Query 59 TGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||||||||| |||| | || |||| | | |||| | ||| |||| |||||||
Sbjct 1584 TGCTTTCGCATCCGCTCGACCCGTCAGTCTCACGGTGAAGCTCCCTTGTGCCCTTGCACT 1525
>seq193620
Length=378
Score = 77.0 bits (84), Expect = 2e-12
Identities = 87/117 (74%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||| ||| |||| || | ||||||||||| ||||
Sbjct 49 TACCTTTTATCCGTTGAGCGACACCCCATCCACACAGAAGTGCCGGATCACTAGTCCCTG 108
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117
|||||||| |||||| | || |||| || |||||| | ||| ||| || |||
Sbjct 109 CTTTCGCACCTGCTCGACCCGTCAGTCTCACAGTCAAGCCCTCTTCTGCACTTACAC 165
>seq13245
Length=471
Score = 75.2 bits (82), Expect = 8e-12
Identities = 78/100 (78%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 40 CCACCGGATCACTATGACCTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGC 99
|||||||||||||||| || |||||| ||||||| | |||| ||| ||| ||| ||
Sbjct 5 CCACCGGATCACTATGGCCGACTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGGC 64
Query 100 ACACTTTTGCCATTGCACTATCACTA-CGATTTCCGACCG 138
||| |||||||||||| || | |||||||||||||
Sbjct 65 TGGCTTCTGCCATTGCACT-CAACGACCGATTTCCGACCG 103
>seq104566
Length=738
Score = 73.4 bits (80), Expect = 3e-11
Identities = 87/118 (74%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| | |||||||| ||| || ||||||||| | ||
Sbjct 41 TAACTTTTATCCGTTGAGCGACGACCCTTCCACTCAGCACCGTTGGATCACTAAGGCCGA 100
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| ||||||| | || ||| | | |||||| | ||| |||| || ||||
Sbjct 101 CTTTCGTCTCTGCTCGACGGGTGAGTCTTGTAGTCAAGCTCCCTTCTGCCTTTACACT 158
>seq511386
Length=3368
Score = 71.6 bits (78), Expect = 1e-10
Identities = 90/121 (74%), Gaps = 6/121 (5%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCA---CCGGATCACTATGAC 57
||||||||||||||||||||| | | |||||| ||| |||| ||||||||||| |
Sbjct 41 TACCTTTTATCCGTTGAGCGACGCCGCTTCCA--CAT-GCCAGCGCCGGATCACTAGTTC 97
Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117
| |||||| |||||| | ||| |||| || |||||| | ||| ||| || |||
Sbjct 98 CGACTTTCGTCCCTGCTCGACATGTCTGTCTCACAGTCAAGCTCCCTTGTGCACTTACAC 157
Query 118 T 118
|
Sbjct 158 T 158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 350265430900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |