Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq63415 181 1e-43 seq138101 131 2e-28 seq103405 125 7e-27 seq274727 123 2e-26 seq474396 118 1e-24 seq251469 118 1e-24 seq188 114 1e-23 seq417335 109 5e-22 seq193620 105 6e-21 seq13245 104 2e-20 seq511854 100 3e-19 seq324390 100 3e-19 seq524056 78.8 9e-13 seq517702 77.0 3e-12 seq201268 75.2 1e-11 >seq63415 Length=389 Score = 181 bits (200), Expect = 1e-43 Identities = 132/153 (86%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 27 GAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTC 86 |||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||||| Sbjct 1 GAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTGCTC 60 Query 87 GAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGA 146 || ||| |||||||||||||| |||| |||| || |||||||| || ||| ||||| Sbjct 61 GACATGTCTGTCTCGCAGTCAAGCGTGCTTTTGCCTTTACACTAACCGCATGATTTCCGA 120 Query 147 CCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || || ||||| |||||||||||||||||||| Sbjct 121 CCATGCTTAGCACACCTTCGTGCTCCTCCGTTA 153 >seq138101 Length=1814 Score = 131 bits (144), Expect = 2e-28 Identities = 124/157 (79%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | |||||||||||||||||||| |||||| ||| Sbjct 1615 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 1674 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT-AACCTCACGATGT 142 ||||| ||||| ||||||||||| || ||||||||||||||||| | ||| | | Sbjct 1675 CTCGACTCGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCTTGCAGACGGTTT 1734 Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || ||||| | ||| ||| ||| || ||||||||| Sbjct 1735 CCAACCGTCCTGAGCCTACCATCGCGCGCCTCCGTTA 1771 Score = 96.9 bits (106), Expect = 3e-18 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | |||||||||||||||||||| |||||| ||| Sbjct 588 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 647 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || | ||| |||||||||| ||| |||| ||||||| Sbjct 648 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 693 >seq103405 Length=3107 Score = 125 bits (138), Expect = 7e-27 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 26 TGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCT 85 ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| | Sbjct 2644 TGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTGCTTTCGCACCTGAT 2585 Query 86 CGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCG 145 ||| || |||| ||||||||| ||||||||||| |||| | |||| | || Sbjct 2584 CGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCCATTACACTCTACGCACGGTTACCA 2525 Query 146 ACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | |||| | || ||||| | ||||||||| Sbjct 2524 AGCGTGCTGAGGGTACCTTTGAAAGCCTCCGTTA 2491 >seq274727 Length=2183 Score = 123 bits (136), Expect = 2e-26 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | | ||||||||||||||| | || |||||| ||| Sbjct 1782 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTAAGGCCGACTTTCGTCTCTG 1723 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||| || ||| | ||| |||||| || ||||||||| ||||||| | | ||||||| Sbjct 1722 TTCGCGCTGTCGCGCTCACAGTCAGGCGGGCTTATGCCTTTGCACTCAACAGCCGATGTC 1663 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| ||| ||| || ||||||||| Sbjct 1662 CGACCGGCTTGAGCCCACCATCGCGCGCCTCCGTTA 1627 >seq474396 Length=202 Score = 118 bits (130), Expect = 1e-24 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| ||||||||||||||||||||| || |||||| |||| Sbjct 5 TTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCGTCTTTCGACCCTGA 64 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| || |||| ||||||||| ||||||||||||||||| Sbjct 65 TCGACTTGTTGGTCTCACAGTCAAGCGGGCTTATGCCATTGCACT 109 >seq251469 Length=442 Score = 118 bits (130), Expect = 1e-24 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| |||||||||||||||||||| || |||||| || || Sbjct 1 TTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCAGC 60 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 |||| ||| |||| | ||||||| ||||||||| |||||||| | ||| | || Sbjct 61 TCGACTTGTCTGTCTCACTGTCAAGCAAGCTTATGCTATTGCACTCCGCGTACGGTTACC 120 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | |||| ||||| | ||||||||| Sbjct 121 AAGCGTACTGAGCTTACCTTTGAAAGCCTCCGTTA 155 >seq188 Length=531 Score = 114 bits (126), Expect = 1e-23 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 27 GAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTC 86 |||||||||||||||||| |||||||||||||||||||| || |||||| |||| || Sbjct 1 GAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGATC 60 Query 87 GAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 || | || |||| ||||||||| ||||||||| |||||||| Sbjct 61 GACCTGTATGTCTCACAGTCAAGCAAGCTTATGCTATTGCACT 103 >seq417335 Length=407 Score = 109 bits (120), Expect = 5e-22 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 27 GAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTC 86 |||||||||||||||||| | | ||||||||||||||| | || |||||| ||||||| Sbjct 1 GAGCGATGGCCCTTCCATGCGGTACCACCGGATCACTAAGCCCGACTTTCGTCCCTGCTC 60 Query 87 GAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGA 146 || | ||| |||||||||||||| |||||||| || ||| | | ||| ||| | Sbjct 61 GACCTGTCCGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACGCTGCGAATGATTTCCAA 120 Query 147 CCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || | | || ||||| | || ||||||||| Sbjct 121 CCATTCTGAGGGAACCTTTGGGCGCCTCCGTTA 153 >seq193620 Length=378 Score = 105 bits (116), Expect = 6e-21 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||| |||| ||||| ||||||||||| |||||||||||||||| Sbjct 61 GTTGAGCGACACCCCATCCACACAGAAGTGCCGGATCACTAGTCCCTGCTTTCGCACCTG 120 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||||| |||| |||||||||| ||| ||| || ||| ||| | ||| | Sbjct 121 CTCGACCCGTCAGTCTCACAGTCAAGCCCTCTTCTGCACTTACACGCACCGCCTGATTCC 180 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | | || |||||| | | ||||||||| Sbjct 181 CAACCAAGCTGAGAGGACCTTTGGACGCCTCCGTTA 216 >seq13245 Length=471 Score = 104 bits (114), Expect = 2e-20 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 50 ACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAG 109 ||||||||||||||||| || |||||| |||||||| |||| ||| ||||||| | Sbjct 4 ACCACCGGATCACTATGGCCGACTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGG 63 Query 110 CCAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGTGC 169 | |||| |||||||||||| | | |||| |||||||| | ||| ||||||| || Sbjct 64 CTGGCTTCTGCCATTGCACTCAACGACCGATTTCCGACCGGTCTGAGCCAACCTTCGCGC 123 Query 170 TCCTCCGTTA 179 ||||||||| Sbjct 124 GCCTCCGTTA 133 >seq511854 Length=389 Score = 100 bits (110), Expect = 3e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||||||||||| | |||||||||||||||||| || |||||| || | Sbjct 23 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATACCCGACTTTCGTCCCAGA 82 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 ||| | || ||| | ||||||| |||| ||| |||||||| ||| |||| || Sbjct 83 TCGGCCTGTTTGCCTCACTGTCAAGCTTGCTTTTGCTATTGCACTCCCCTGCCGATTACC 142 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| || ||| ||||| | ||||||||| Sbjct 143 GTCCGGCATGAGCAAACCTTGGGAAACCTCCGTTA 177 >seq324390 Length=462 Score = 100 bits (110), Expect = 3e-19 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||||||| | |||| | ||||||||||||||||| |||||||||||||| | Sbjct 52 TTGAGCGATGGCACACCCATGCGCAACCACCGGATCACTATACCCTGCTTTCGCACCAGT 111 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 |||| | || |||| | ||||||| |||||||| |||||||| Sbjct 112 TCGACCTGTGTGTCTCACTGTCAAGCTCGCTTATGCTATTGCACT 156 >seq524056 Length=5204 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| |||| ||| |||||||||| | | |||||| ||| Sbjct 1882 GTTGAGCGATGGCCCTTCCACTCAGCACCGTCGGATCACTAAGGCTGACTTTCGTCTCTG 1941 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||||| || | ||| |||||||||| ||| | || || |||| Sbjct 1942 CTCGATGGGTGAGTCTTGCAGTCAAGCTCCCTTCTACCTTTTCACT 1987 >seq517702 Length=627 Score = 77.0 bits (84), Expect = 3e-12 Identities = 114/159 (72%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCAC---CGGATCACTATGACCTGCTTTCGCAC 80 ||||||||| || ||||| || |||||| |||||||||| || |||||| | Sbjct 586 GTTGAGCGACCGCGTTTCCA--CA-AACCACGGCCGGATCACTAGTTCCGACTTTCGTCC 530 Query 81 CTGCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGAT 140 |||||||| | |||| |||||||||||||| ||| ||| || |||| | | ||| Sbjct 529 CTGCTCGACCTGTCAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCGACACCTGAT 470 Query 141 GTCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || ||| ||| || ||||| | || ||||||||| Sbjct 469 TGCCAACCAGGATGAGGGAACCTTTGAGCGCCTCCGTTA 431 >seq201268 Length=2082 Score = 75.2 bits (82), Expect = 1e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 54 CCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCCAG 113 ||||||||||| | |||||||||||| | |||||| |||||| |||| | || |||| Sbjct 1600 CCGGATCACTAGGCCCTGCTTTCGCATCCGCTCGACCCGTCAGTCTCACGGTGAAGCTCC 1541 Query 114 CTTATGCCATTGCACT 129 ||| |||| ||||||| Sbjct 1540 CTTGTGCCCTTGCACT 1525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471188423324