Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq63415 181 1e-43
seq138101 131 2e-28
seq103405 125 7e-27
seq274727 123 2e-26
seq474396 118 1e-24
seq251469 118 1e-24
seq188 114 1e-23
seq417335 109 5e-22
seq193620 105 6e-21
seq13245 104 2e-20
seq511854 100 3e-19
seq324390 100 3e-19
seq524056 78.8 9e-13
seq517702 77.0 3e-12
seq201268 75.2 1e-11
>seq63415
Length=389
Score = 181 bits (200), Expect = 1e-43
Identities = 132/153 (86%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 27 GAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTC 86
|||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||||||
Sbjct 1 GAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTGCTC 60
Query 87 GAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGA 146
|| ||| |||||||||||||| |||| |||| || |||||||| || ||| |||||
Sbjct 61 GACATGTCTGTCTCGCAGTCAAGCGTGCTTTTGCCTTTACACTAACCGCATGATTTCCGA 120
Query 147 CCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|| || ||||| ||||||||||||||||||||
Sbjct 121 CCATGCTTAGCACACCTTCGTGCTCCTCCGTTA 153
>seq138101
Length=1814
Score = 131 bits (144), Expect = 2e-28
Identities = 124/157 (79%), Gaps = 1/157 (1%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | |||||||||||||||||||| |||||| |||
Sbjct 1615 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 1674
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT-AACCTCACGATGT 142
||||| ||||| ||||||||||| || ||||||||||||||||| | ||| | |
Sbjct 1675 CTCGACTCGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCTTGCAGACGGTTT 1734
Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|| ||||| | ||| ||| ||| || |||||||||
Sbjct 1735 CCAACCGTCCTGAGCCTACCATCGCGCGCCTCCGTTA 1771
Score = 96.9 bits (106), Expect = 3e-18
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | |||||||||||||||||||| |||||| |||
Sbjct 588 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 647
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || | ||| |||||||||| ||| |||| |||||||
Sbjct 648 CTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 693
>seq103405
Length=3107
Score = 125 bits (138), Expect = 7e-27
Identities = 120/154 (78%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 26 TGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCT 85
||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
Sbjct 2644 TGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTGCTTTCGCACCTGAT 2585
Query 86 CGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCG 145
||| || |||| ||||||||| ||||||||||| |||| | |||| | ||
Sbjct 2584 CGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCCATTACACTCTACGCACGGTTACCA 2525
Query 146 ACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| |||| | || ||||| | |||||||||
Sbjct 2524 AGCGTGCTGAGGGTACCTTTGAAAGCCTCCGTTA 2491
>seq274727
Length=2183
Score = 123 bits (136), Expect = 2e-26
Identities = 121/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| | | ||||||||||||||| | || |||||| |||
Sbjct 1782 GTTGAGCGATGGCCCTTCCACGCGGGACCACCGGATCACTAAGGCCGACTTTCGTCTCTG 1723
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||| || ||| | ||| |||||| || ||||||||| ||||||| | | |||||||
Sbjct 1722 TTCGCGCTGTCGCGCTCACAGTCAGGCGGGCTTATGCCTTTGCACTCAACAGCCGATGTC 1663
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|||||| | ||| ||| ||| || |||||||||
Sbjct 1662 CGACCGGCTTGAGCCCACCATCGCGCGCCTCCGTTA 1627
>seq474396
Length=202
Score = 118 bits (130), Expect = 1e-24
Identities = 89/105 (85%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||||||||||||||| ||||||||||||||||||||| || |||||| ||||
Sbjct 5 TTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCGTCTTTCGACCCTGA 64
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
|||| || |||| ||||||||| |||||||||||||||||
Sbjct 65 TCGACTTGTTGGTCTCACAGTCAAGCGGGCTTATGCCATTGCACT 109
>seq251469
Length=442
Score = 118 bits (130), Expect = 1e-24
Identities = 119/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||||||||||||||| |||||||||||||||||||| || |||||| || ||
Sbjct 1 TTGAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCAGC 60
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144
|||| ||| |||| | ||||||| ||||||||| |||||||| | ||| | ||
Sbjct 61 TCGACTTGTCTGTCTCACTGTCAAGCAAGCTTATGCTATTGCACTCCGCGTACGGTTACC 120
Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| ||| | |||| ||||| | |||||||||
Sbjct 121 AAGCGTACTGAGCTTACCTTTGAAAGCCTCCGTTA 155
>seq188
Length=531
Score = 114 bits (126), Expect = 1e-23
Identities = 87/103 (84%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 27 GAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTC 86
|||||||||||||||||| |||||||||||||||||||| || |||||| |||| ||
Sbjct 1 GAGCGATGGCCCTTCCATGCAGAACCACCGGATCACTATATCCGTCTTTCGACCCTGATC 60
Query 87 GAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
|| | || |||| ||||||||| ||||||||| ||||||||
Sbjct 61 GACCTGTATGTCTCACAGTCAAGCAAGCTTATGCTATTGCACT 103
>seq417335
Length=407
Score = 109 bits (120), Expect = 5e-22
Identities = 116/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 27 GAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTC 86
|||||||||||||||||| | | ||||||||||||||| | || |||||| |||||||
Sbjct 1 GAGCGATGGCCCTTCCATGCGGTACCACCGGATCACTAAGCCCGACTTTCGTCCCTGCTC 60
Query 87 GAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGA 146
|| | ||| |||||||||||||| |||||||| || ||| | | ||| ||| |
Sbjct 61 GACCTGTCCGTCTCGCAGTCAAGCTCCCTTATGCCTTTACACGCTGCGAATGATTTCCAA 120
Query 147 CCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|| | | || ||||| | || |||||||||
Sbjct 121 CCATTCTGAGGGAACCTTTGGGCGCCTCCGTTA 153
>seq193620
Length=378
Score = 105 bits (116), Expect = 6e-21
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||| |||| ||||| ||||||||||| ||||||||||||||||
Sbjct 61 GTTGAGCGACACCCCATCCACACAGAAGTGCCGGATCACTAGTCCCTGCTTTCGCACCTG 120
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| |||||| |||| |||||||||| ||| ||| || ||| ||| | ||| |
Sbjct 121 CTCGACCCGTCAGTCTCACAGTCAAGCCCTCTTCTGCACTTACACGCACCGCCTGATTCC 180
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| ||| | | || |||||| | | |||||||||
Sbjct 181 CAACCAAGCTGAGAGGACCTTTGGACGCCTCCGTTA 216
>seq13245
Length=471
Score = 104 bits (114), Expect = 2e-20
Identities = 101/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 50 ACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAG 109
||||||||||||||||| || |||||| |||||||| |||| ||| ||||||| |
Sbjct 4 ACCACCGGATCACTATGGCCGACTTTCGTCTCTGCTCGACTTGTCAGTCTTGCAGTCAGG 63
Query 110 CCAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGTGC 169
| |||| |||||||||||| | | |||| |||||||| | ||| ||||||| ||
Sbjct 64 CTGGCTTCTGCCATTGCACTCAACGACCGATTTCCGACCGGTCTGAGCCAACCTTCGCGC 123
Query 170 TCCTCCGTTA 179
|||||||||
Sbjct 124 GCCTCCGTTA 133
>seq511854
Length=389
Score = 100 bits (110), Expect = 3e-19
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||||||||||||||| | |||||||||||||||||| || |||||| || |
Sbjct 23 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTATACCCGACTTTCGTCCCAGA 82
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144
||| | || ||| | ||||||| |||| ||| |||||||| ||| |||| ||
Sbjct 83 TCGGCCTGTTTGCCTCACTGTCAAGCTTGCTTTTGCTATTGCACTCCCCTGCCGATTACC 142
Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| ||| || ||| ||||| | |||||||||
Sbjct 143 GTCCGGCATGAGCAAACCTTGGGAAACCTCCGTTA 177
>seq324390
Length=462
Score = 100 bits (110), Expect = 3e-19
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||||||| | |||| | ||||||||||||||||| |||||||||||||| |
Sbjct 52 TTGAGCGATGGCACACCCATGCGCAACCACCGGATCACTATACCCTGCTTTCGCACCAGT 111
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
|||| | || |||| | ||||||| |||||||| ||||||||
Sbjct 112 TCGACCTGTGTGTCTCACTGTCAAGCTCGCTTATGCTATTGCACT 156
>seq524056
Length=5204
Score = 78.8 bits (86), Expect = 9e-13
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
|||||||||||||||||||| |||| ||| |||||||||| | | |||||| |||
Sbjct 1882 GTTGAGCGATGGCCCTTCCACTCAGCACCGTCGGATCACTAAGGCTGACTTTCGTCTCTG 1941
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||||| || | ||| |||||||||| ||| | || || ||||
Sbjct 1942 CTCGATGGGTGAGTCTTGCAGTCAAGCTCCCTTCTACCTTTTCACT 1987
>seq517702
Length=627
Score = 77.0 bits (84), Expect = 3e-12
Identities = 114/159 (72%), Gaps = 6/159 (4%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCAC---CGGATCACTATGACCTGCTTTCGCAC 80
||||||||| || ||||| || |||||| |||||||||| || |||||| |
Sbjct 586 GTTGAGCGACCGCGTTTCCA--CA-AACCACGGCCGGATCACTAGTTCCGACTTTCGTCC 530
Query 81 CTGCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGAT 140
|||||||| | |||| |||||||||||||| ||| ||| || |||| | | |||
Sbjct 529 CTGCTCGACCTGTCAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCGACACCTGAT 470
Query 141 GTCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|| ||| ||| || ||||| | || |||||||||
Sbjct 469 TGCCAACCAGGATGAGGGAACCTTTGAGCGCCTCCGTTA 431
>seq201268
Length=2082
Score = 75.2 bits (82), Expect = 1e-11
Identities = 62/76 (82%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 54 CCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCCAG 113
||||||||||| | |||||||||||| | |||||| |||||| |||| | || ||||
Sbjct 1600 CCGGATCACTAGGCCCTGCTTTCGCATCCGCTCGACCCGTCAGTCTCACGGTGAAGCTCC 1541
Query 114 CTTATGCCATTGCACT 129
||| |||| |||||||
Sbjct 1540 CTTGTGCCCTTGCACT 1525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471188423324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |