Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01001951.1 Length=416 Score E Sequences producing significant alignments: (Bits) Value seq359267 132 1e-28 seq50890 95.1 3e-17 seq365261 80.6 7e-13 seq11907 78.8 2e-12 seq393481 75.2 3e-11 seq233167 75.2 3e-11 seq100127 75.2 3e-11 >seq359267 Length=1549 Score = 132 bits (146), Expect = 1e-28 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 215 GATGCTGGCGAATGAAAAAACCTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAA 274 ||||||||| |||||||| | ||||||| ||||||||| ||||||||||||||| || Sbjct 1 GATGCTGGCCAATGAAAAGAGCTGGCGCTCCGAAGAAGAGATCCGCAGCGGCCTGCTGCG 60 Query 275 ACTCTGGCGCGCCATGCAGGATTGCGTGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCC 334 ||||| || |||| || |||||| || | || ||| |||| || |||||||| Sbjct 61 TATCTGGAACGTGATGCGCGAATGCGTGCAGAACGGTCTCGCCAACGAGGGCATCCTGCC 120 Query 335 CGGCGGCTTGAACGTGCGCCGTCGCGCTGCCAAGTTACACCGCAGCTTGCAGGAGCTGAA 394 ||||||| | || ||||| || ||||| ||| | |||| || |||||| | Sbjct 121 CGGCGGCCTCAAGGTGCGTCGCCGCGCCGCCCGCCTGCACCAGAGTCTGCAGGCCATCGG 180 Query 395 CAAGCCCAATGTGATCGGCTC 415 ||||||||| || |||||||| Sbjct 181 CAAGCCCAACGTCATCGGCTC 201 >seq50890 Length=1055 Score = 95.1 bits (104), Expect = 3e-17 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 3 CATCCCAACGCCATGACCCAGGTGGTGTTTGGCGAAAACGGCGAGCTGCACCGCGAC-AC 61 || ||||| |||||||||| | | ||||||| | ||||||| || ||| | | || Sbjct 164 CACCCCAATGCCATGACCCTGACCGCCTTTGGCGCCACCGGCGAGGTGG-CCGAGGCGAC 106 Query 62 CTATTACTCGGTGGGTGGCGGTTTCGTGGTGGATGAAGCCCAGGCCCAAAGCGGTGTGGC 121 ||| || || | ||||| || ||||||||||| | ||||||||| ||||| ||| Sbjct 105 CTACTATTCCATCGGTGGTGGCTTCGTGGTGGACGCCGCCCAGGCCGCCAGCGGCGTGCT 46 Query 122 GGACATGGACCGTACCGAGCTGCCCTATGATTTTTCCAG 160 ||||| ||| |||||||||||||| || || ||||| Sbjct 45 GGACAACGACACCACCGAGCTGCCCTACGACTTCTCCAG 7 >seq365261 Length=495 Score = 80.6 bits (88), Expect = 7e-13 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 236 CTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGA 295 |||||||| || ||||||||| || ||||||| || ||||| | |||||||| Sbjct 463 CTGGCGCACAGATGAAGAAATCGACAACGGCCTGCTGGGGATCTGGAAGGTCATGCAGGG 404 Query 296 TTGCGTGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCCG 355 || || |||| ||| | |||||| || |||||||||||||| || |||||||| Sbjct 403 CTGTGTCGAGCGTGGCTGCCGTACCGAAGGCATTCTGCCCGGCGGCTTCAAGGTGCGCCG 344 Query 356 TCGCGCTGC 364 ||| || || Sbjct 343 TCGGGCGGC 335 >seq11907 Length=466 Score = 78.8 bits (86), Expect = 2e-12 Identities = 97/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 236 CTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGA 295 |||||||| ||| || |||||| || ||||||| || ||||| | ||||||| Sbjct 256 CTGGCGCACCGACGAGGAAATCGACAACGGCCTGCTGGCCATCTGGAAGGTGATGCAGGG 315 Query 296 TTGCGTGGAGCAGGGCCTCAAGCAC-GAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCC 354 ||||| |||| || | |||| || || ||||||||||||||||| || ||||| | Sbjct 316 CTGCGTCGAGCGCGGTTGCC-GCACCGAGGGCATCCTGCCCGGCGGCTTCAAGGTGCGGC 374 Query 355 GTCGCGCTGC 364 ||||||| || Sbjct 375 GTCGCGCGGC 384 >seq393481 Length=1909 Score = 75.2 bits (82), Expect = 3e-11 Identities = 96/130 (74%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 236 CTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGA 295 |||||||| ||| ||||| ||| || |||||| || ||||| | ||||||| Sbjct 706 CTGGCGCACCGACGAAGAGATCGACAAGGGCCTGCTGGCGATCTGGAAGGTGATGCAGGG 765 Query 296 TTGCGTGGAGCAGGGCCTCAAGCAC-GAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCC 354 ||||| |||| || | |||| || || || |||||||||||||| || ||||||| Sbjct 766 CTGCGTCGAGCGCGGTTGCC-GCACCGAGGGCATTCTGCCCGGCGGCTTCAAGGTGCGCC 824 Query 355 GTCGCGCTGC 364 ||||||| || Sbjct 825 GTCGCGCGGC 834 >seq233167 Length=201 Score = 75.2 bits (82), Expect = 3e-11 Identities = 108/150 (72%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 213 CTGATGCTGGCGAATGAAAAAACCTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATG 272 |||||||| | ||| ||||| |||||||||||| || || |||||| || ||| Sbjct 188 CTGATGCTCGAGAACGAAAAGGTCTGGCGCAGCGAGGACGAGATCCGCGCGGGTCTGCGC 129 Query 273 AAACTCTGGCGCGCCATGCAGGATTGCGTGGAGCAGGGCCTCAAGCACGAAGGT-ATCCT 331 | |||||| || ||||||| ||||||| || ||| || || || || | ||| Sbjct 128 GAGATCTGGCAGGCGATGCAGGCCTGCGTGGCGCGCGGCATCC-GCGAGACGGGCACCCT 70 Query 332 GCCCGGCGGCTTGAACGTGCGCCGTCGCGC 361 |||||||||| || ||||| || ||||| Sbjct 69 GCCCGGCGGCCTGCACGTGACGCGGCGCGC 40 >seq100127 Length=455 Score = 75.2 bits (82), Expect = 3e-11 Identities = 108/150 (72%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 213 CTGATGCTGGCGAATGAAAAAACCTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATG 272 |||||||| | ||| || || |||||||||||| || || |||||| ||||||| Sbjct 261 CTGATGCTCGAGAACGAGAAGGTCTGGCGCAGCGAGGACGAGATCCGCGCCGGCCTGCGC 320 Query 273 AAACTCTGGCGCGCCATGCAGGATTGCGTGGAGCAGGGCCTCAAGCACGA-AGGTATCCT 331 | |||||| || ||||||| ||||||| || ||| || || || || | ||| Sbjct 321 GAGATCTGGCAGGCGATGCAGGCCTGCGTGGCGCGCGGCATC-CGCGAGACGGGCACCCT 379 Query 332 GCCCGGCGGCTTGAACGTGCGCCGTCGCGC 361 |||||||||| | ||||| || ||||| Sbjct 380 GCCCGGCGGCCTCCACGTGACGCGGCGCGC 409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222341095424