Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01001951.1
Length=416
Score E
Sequences producing significant alignments: (Bits) Value
seq359267 132 1e-28
seq50890 95.1 3e-17
seq365261 80.6 7e-13
seq11907 78.8 2e-12
seq393481 75.2 3e-11
seq233167 75.2 3e-11
seq100127 75.2 3e-11
>seq359267
Length=1549
Score = 132 bits (146), Expect = 1e-28
Identities = 150/201 (75%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 215 GATGCTGGCGAATGAAAAAACCTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAA 274
||||||||| |||||||| | ||||||| ||||||||| ||||||||||||||| ||
Sbjct 1 GATGCTGGCCAATGAAAAGAGCTGGCGCTCCGAAGAAGAGATCCGCAGCGGCCTGCTGCG 60
Query 275 ACTCTGGCGCGCCATGCAGGATTGCGTGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCC 334
||||| || |||| || |||||| || | || ||| |||| || ||||||||
Sbjct 61 TATCTGGAACGTGATGCGCGAATGCGTGCAGAACGGTCTCGCCAACGAGGGCATCCTGCC 120
Query 335 CGGCGGCTTGAACGTGCGCCGTCGCGCTGCCAAGTTACACCGCAGCTTGCAGGAGCTGAA 394
||||||| | || ||||| || ||||| ||| | |||| || |||||| |
Sbjct 121 CGGCGGCCTCAAGGTGCGTCGCCGCGCCGCCCGCCTGCACCAGAGTCTGCAGGCCATCGG 180
Query 395 CAAGCCCAATGTGATCGGCTC 415
||||||||| || ||||||||
Sbjct 181 CAAGCCCAACGTCATCGGCTC 201
>seq50890
Length=1055
Score = 95.1 bits (104), Expect = 3e-17
Identities = 118/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 3 CATCCCAACGCCATGACCCAGGTGGTGTTTGGCGAAAACGGCGAGCTGCACCGCGAC-AC 61
|| ||||| |||||||||| | | ||||||| | ||||||| || ||| | | ||
Sbjct 164 CACCCCAATGCCATGACCCTGACCGCCTTTGGCGCCACCGGCGAGGTGG-CCGAGGCGAC 106
Query 62 CTATTACTCGGTGGGTGGCGGTTTCGTGGTGGATGAAGCCCAGGCCCAAAGCGGTGTGGC 121
||| || || | ||||| || ||||||||||| | ||||||||| ||||| |||
Sbjct 105 CTACTATTCCATCGGTGGTGGCTTCGTGGTGGACGCCGCCCAGGCCGCCAGCGGCGTGCT 46
Query 122 GGACATGGACCGTACCGAGCTGCCCTATGATTTTTCCAG 160
||||| ||| |||||||||||||| || || |||||
Sbjct 45 GGACAACGACACCACCGAGCTGCCCTACGACTTCTCCAG 7
>seq365261
Length=495
Score = 80.6 bits (88), Expect = 7e-13
Identities = 95/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 236 CTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGA 295
|||||||| || ||||||||| || ||||||| || ||||| | ||||||||
Sbjct 463 CTGGCGCACAGATGAAGAAATCGACAACGGCCTGCTGGGGATCTGGAAGGTCATGCAGGG 404
Query 296 TTGCGTGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCCG 355
|| || |||| ||| | |||||| || |||||||||||||| || ||||||||
Sbjct 403 CTGTGTCGAGCGTGGCTGCCGTACCGAAGGCATTCTGCCCGGCGGCTTCAAGGTGCGCCG 344
Query 356 TCGCGCTGC 364
||| || ||
Sbjct 343 TCGGGCGGC 335
>seq11907
Length=466
Score = 78.8 bits (86), Expect = 2e-12
Identities = 97/130 (75%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 236 CTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGA 295
|||||||| ||| || |||||| || ||||||| || ||||| | |||||||
Sbjct 256 CTGGCGCACCGACGAGGAAATCGACAACGGCCTGCTGGCCATCTGGAAGGTGATGCAGGG 315
Query 296 TTGCGTGGAGCAGGGCCTCAAGCAC-GAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCC 354
||||| |||| || | |||| || || ||||||||||||||||| || ||||| |
Sbjct 316 CTGCGTCGAGCGCGGTTGCC-GCACCGAGGGCATCCTGCCCGGCGGCTTCAAGGTGCGGC 374
Query 355 GTCGCGCTGC 364
||||||| ||
Sbjct 375 GTCGCGCGGC 384
>seq393481
Length=1909
Score = 75.2 bits (82), Expect = 3e-11
Identities = 96/130 (74%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 236 CTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGA 295
|||||||| ||| ||||| ||| || |||||| || ||||| | |||||||
Sbjct 706 CTGGCGCACCGACGAAGAGATCGACAAGGGCCTGCTGGCGATCTGGAAGGTGATGCAGGG 765
Query 296 TTGCGTGGAGCAGGGCCTCAAGCAC-GAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCC 354
||||| |||| || | |||| || || || |||||||||||||| || |||||||
Sbjct 766 CTGCGTCGAGCGCGGTTGCC-GCACCGAGGGCATTCTGCCCGGCGGCTTCAAGGTGCGCC 824
Query 355 GTCGCGCTGC 364
||||||| ||
Sbjct 825 GTCGCGCGGC 834
>seq233167
Length=201
Score = 75.2 bits (82), Expect = 3e-11
Identities = 108/150 (72%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 213 CTGATGCTGGCGAATGAAAAAACCTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATG 272
|||||||| | ||| ||||| |||||||||||| || || |||||| || |||
Sbjct 188 CTGATGCTCGAGAACGAAAAGGTCTGGCGCAGCGAGGACGAGATCCGCGCGGGTCTGCGC 129
Query 273 AAACTCTGGCGCGCCATGCAGGATTGCGTGGAGCAGGGCCTCAAGCACGAAGGT-ATCCT 331
| |||||| || ||||||| ||||||| || ||| || || || || | |||
Sbjct 128 GAGATCTGGCAGGCGATGCAGGCCTGCGTGGCGCGCGGCATCC-GCGAGACGGGCACCCT 70
Query 332 GCCCGGCGGCTTGAACGTGCGCCGTCGCGC 361
|||||||||| || ||||| || |||||
Sbjct 69 GCCCGGCGGCCTGCACGTGACGCGGCGCGC 40
>seq100127
Length=455
Score = 75.2 bits (82), Expect = 3e-11
Identities = 108/150 (72%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 213 CTGATGCTGGCGAATGAAAAAACCTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATG 272
|||||||| | ||| || || |||||||||||| || || |||||| |||||||
Sbjct 261 CTGATGCTCGAGAACGAGAAGGTCTGGCGCAGCGAGGACGAGATCCGCGCCGGCCTGCGC 320
Query 273 AAACTCTGGCGCGCCATGCAGGATTGCGTGGAGCAGGGCCTCAAGCACGA-AGGTATCCT 331
| |||||| || ||||||| ||||||| || ||| || || || || | |||
Sbjct 321 GAGATCTGGCAGGCGATGCAGGCCTGCGTGGCGCGCGGCATC-CGCGAGACGGGCACCCT 379
Query 332 GCCCGGCGGCTTGAACGTGCGCCGTCGCGC 361
|||||||||| | ||||| || |||||
Sbjct 380 GCCCGGCGGCCTCCACGTGACGCGGCGCGC 409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222341095424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |