Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01002002.1
Length=198
Score E
Sequences producing significant alignments: (Bits) Value
seq283367 176 5e-42
seq281328 170 2e-40
seq21092 78.8 1e-12
>seq283367
Length=1161
Score = 176 bits (194), Expect = 5e-42
Identities = 144/174 (83%), Gaps = 1/174 (1%)
Strand=Plus/Plus
Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60
||||||||||||||||| |||||||||||||| | ||| | || | |||||| | || |
Sbjct 561 TGCTGACCAACATCGCCGGCCTGATGGACAAGCAGGGCGAAGTACTCACCGGCCT-GAGC 619
Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120
|| |||| || |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 ACCGAACAGGTCAACGAACTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 679
Query 121 ATCCGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCTC 174
||| ||||| |||||||| || || || |||||| |||||||| ||| ||
Sbjct 680 ATCAAGTGCGCCCTGGAAGCGGTACAGGGTGGCGTGACCAGCTCGCACATCATC 733
>seq281328
Length=1042
Score = 170 bits (188), Expect = 2e-40
Identities = 132/156 (85%), Gaps = 1/156 (1%)
Strand=Plus/Plus
Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60
||||||||||||||||| |||||||||||||| | ||| ||||| | ||||| | | ||
Sbjct 15 TGCTGACCAACATCGCCGGCCTGATGGACAAGCAGGGCCAGGTGCTCACCGGGCT-GTCC 73
Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120
|| | || || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 ACCGAGCAGGTCAATTCGCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 133
Query 121 ATCCGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTG 156
||||| ||||| |||||||| ||||| |||||||||
Sbjct 134 ATCCGCTGCGCGCTGGAAGCGGTGCAGGGCGGCGTG 169
>seq21092
Length=323
Score = 78.8 bits (86), Expect = 1e-12
Identities = 114/157 (73%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60
|| |||||||||||||| || || || || | ||||| || |||||| | | | |
Sbjct 2 TGATGACCAACATCGCCGGCGTGCAAGATAAAGCGGGCAATCTGGTGACCGACCT-GTCG 60
Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120
||| | | ||||| || |||| |||||||| |||| ||||||||||||||||||
Sbjct 61 GCGCGCGAGATCGACGAGATGTTCGCGGACGGCACGATCTCGGGCGGCATGCTGCCGAAG 120
Query 121 ATC-CGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTG 156
||| ||| | || ||||| || | | || ||||||
Sbjct 121 ATCTCGTCG-GCGCTGGACGCCGCGAAATCGGGCGTG 156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531678829021
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |