Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01002002.1 Length=198 Score E Sequences producing significant alignments: (Bits) Value seq283367 176 5e-42 seq281328 170 2e-40 seq21092 78.8 1e-12 >seq283367 Length=1161 Score = 176 bits (194), Expect = 5e-42 Identities = 144/174 (83%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60 ||||||||||||||||| |||||||||||||| | ||| | || | |||||| | || | Sbjct 561 TGCTGACCAACATCGCCGGCCTGATGGACAAGCAGGGCGAAGTACTCACCGGCCT-GAGC 619 Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120 || |||| || |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 620 ACCGAACAGGTCAACGAACTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 679 Query 121 ATCCGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCTC 174 ||| ||||| |||||||| || || || |||||| |||||||| ||| || Sbjct 680 ATCAAGTGCGCCCTGGAAGCGGTACAGGGTGGCGTGACCAGCTCGCACATCATC 733 >seq281328 Length=1042 Score = 170 bits (188), Expect = 2e-40 Identities = 132/156 (85%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60 ||||||||||||||||| |||||||||||||| | ||| ||||| | ||||| | | || Sbjct 15 TGCTGACCAACATCGCCGGCCTGATGGACAAGCAGGGCCAGGTGCTCACCGGGCT-GTCC 73 Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120 || | || || | |||||||||||||||||||||||||||||||||||||||||| Sbjct 74 ACCGAGCAGGTCAATTCGCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 133 Query 121 ATCCGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTG 156 ||||| ||||| |||||||| ||||| ||||||||| Sbjct 134 ATCCGCTGCGCGCTGGAAGCGGTGCAGGGCGGCGTG 169 >seq21092 Length=323 Score = 78.8 bits (86), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60 || |||||||||||||| || || || || | ||||| || |||||| | | | | Sbjct 2 TGATGACCAACATCGCCGGCGTGCAAGATAAAGCGGGCAATCTGGTGACCGACCT-GTCG 60 Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120 ||| | | ||||| || |||| |||||||| |||| |||||||||||||||||| Sbjct 61 GCGCGCGAGATCGACGAGATGTTCGCGGACGGCACGATCTCGGGCGGCATGCTGCCGAAG 120 Query 121 ATC-CGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTG 156 ||| ||| | || ||||| || | | || |||||| Sbjct 121 ATCTCGTCG-GCGCTGGACGCCGCGAAATCGGGCGTG 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531678829021