Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01002049.1
Length=571
Score E
Sequences producing significant alignments: (Bits) Value
seq120195 185 3e-44
seq265555 161 3e-37
seq290634 154 5e-35
seq57188 120 1e-24
seq15944 105 2e-20
seq416625 87.8 6e-15
seq461798 84.2 8e-14
>seq120195
Length=404
Score = 185 bits (204), Expect = 3e-44
Identities = 159/192 (83%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 54 GATGATCTTCACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACG 113
||||||| || ||||| | || |||| |||||| |||| || ||| || | ||| |
Sbjct 1 GATGATCCTCGCCGGTGT-GTGGAGCCTGTGGCT-GCGCTGGCGCGGCAGCCTCTACCAG 58
Query 114 TCCAAGCCGTTCCTGTAC--CTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTC 171
|| ||||||||||||| ||| | |||||||||||||||||||| ||||||| ||||
Sbjct 59 TCGCGGCCGTTCCTGTACTTCTGCC--TGTGGATGGGCCCGTCCGGGCTGATCGCCATTC 116
Query 172 TCGCCGGCTGGTTCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGC 231
||||||||||||||||||| || |||||||||||||||||||||||||||||| | ||||
Sbjct 117 TCGCCGGCTGGTTCACCACCGAGATCGGCCGTCAGCCGTGGGTGGTCTACGGCATCATGC 176
Query 232 GCACGGCGGATG 243
|||| || ||||
Sbjct 177 GCACCGCCGATG 188
Score = 107 bits (118), Expect = 7e-21
Identities = 85/102 (83%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 279 ACGCTGGTGTTGTTCGTGGTGGTGTACTTCGCGCTGTTCGGTGCCGGTCTGGGCTACATG 338
|| |||||| ||||||||||||||||||||||| ||||||| || || | |||||| ||
Sbjct 297 ACCCTGGTGCTGTTCGTGGTGGTGTACTTCGCGGTGTTCGGCGCGGGCTTCGGCTACGTG 356
Query 339 ATGCGCCTGGTGCGCAAAGGTCCGCAGACCCACGAAGGCGAT 380
||||||||||||||||| || ||| ||| ||| ||||||
Sbjct 357 ATGCGCCTGGTGCGCAAGGGGCCGGTCACCGGCGAGGGCGAT 398
>seq265555
Length=416
Score = 161 bits (178), Expect = 3e-37
Identities = 159/201 (79%), Gaps = 6/201 (3%)
Strand=Plus/Minus
Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63
|||||| ||| |||| |||||||||| ||| ||||| | |||| | ||||||||| ||
Sbjct 197 TCGACCATCGTGTTCTGGTCGTTCCGCATCATGGTCGCCATGGGCCTGCTGATGATCCTC 138
Query 64 ACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGT 123
||||| | || |||| |||||| |||| || ||| || | ||| ||| ||||
Sbjct 137 GCCGGTGT-GTGGAGCCTGTGGCT-GCGCTGGCGCGGCAGCCTCTACCAGTCGCGCCCGT 80
Query 124 TCCTGTAC--CTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTG 181
|||||||| ||| | |||||||||||||||||||| ||||||| || |||||||||||
Sbjct 79 TCCTGTACTTCTGCC--TGTGGATGGGCCCGTCCGGGCTGATCGCCATCCTCGCCGGCTG 22
Query 182 GTTCACCACGGAAATCGGCCG 202
||||||||| || ||||||||
Sbjct 21 GTTCACCACCGAGATCGGCCG 1
>seq290634
Length=4222
Score = 154 bits (170), Expect = 5e-35
Identities = 376/574 (66%), Gaps = 32/574 (6%)
Strand=Plus/Plus
Query 15 GTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTCACCGGTCTAGT 74
|||| |||||||||| ||| ||||| || |||| | ||||||||| | |||| || ||
Sbjct 2695 GTTCTGGTCGTTCCGCATCATGGTCGCCCTGGGCATGCTGATGATCGCCGCCGGCCT-GT 2753
Query 75 TCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGTTCCTGTACCTG 134
||| ||||| |||| || ||| |||| ||| | | || | |||||| ||||
Sbjct 2754 GGAGCGCCTGGCT-GCGCTGGCGCGGCAAGCTGTTCGAGACCCGCGCCTTCCTGCGCCTG 2812
Query 135 GCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGTTCACCACGGAA 194
| || ||||| ||| ||| | ||||| | || |||||
Sbjct 2813 GTCACCTGCATGGGACCGGTCGGTCTCATCGCCCTGCTGGCCGGNNNNNNNNNNNNNNNN 2872
Query 195 ATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATGCGTCCTCCGGG 254
||||||||| | |||||||||||| ||||||| ||| | | |||
Sbjct 2873 ---------CAGCCGTGGATCGTCTACGGCCTGTTGCGCACCAAGGACGGGGTATCCAAC 2923
Query 255 CATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGGTGTACTTCGCGCTG 314
|| ||| | ||| | | || || |||||| ||||||||||| || ||||| ||
Sbjct 2924 CACAGCGTCACCCAGCTCAGCATCACCCTGGTGGCCTTCGTGGTGGTCTATTTCGCCGTG 2983
Query 315 TTCGGTGCCGGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTCCGCAGACCCACGAA 374
||||| ||| ||| | ||||| || | |||| |||||||| ||| |||
Sbjct 2984 TTCGGCATCGGCACCCTCTATGCGCTGCGCATGATCGGCAAGGGTCCGCACACCGGTGAA 3043
Query 375 GGCGATGAGCCGACCCACGGTGGTCCTGGCCAGAAACGCACGCCAGCCC----GTCCGTT 430
||||| ||| ||| ||| || || ||| | || ||||| ||| ||||| |
Sbjct 3044 GGCGACCTGCCCACCTCCGGCGGCCCGGGC----ACCGATCGCCATCCCAAGCGTCCGCT 3099
Query 431 GTCTGCCGCCGATGATGGCAGCGATGACGACCACACCCACATCCAGCACAAGGGGCATTG 490
||| | |||||||| ||| || || ||| || || | ||||| | || | |
Sbjct 3100 GTCCGGCGCCGATGGCGGCCTGGAAGAAGACAACCCCACCGACCAGCTGACCGGAGACCG 3159
Query 491 -AGATG------------GGTATTGATCTTCCGCTGATCCGGGCCGTGATCATCATCTTC 537
| ||| || || || || ||||||||| |||| | ||||||||||||
Sbjct 3160 CACATGAACGGCATCCCTGGCATCGACCTCCCGCTGATCTGGGCGATCATCATCATCTTC 3219
Query 538 GGCATCATGATGTACGTGGTCATGGACGGCTTCG 571
||| ||||||||||||||||||||||||||||||
Sbjct 3220 GGCCTCATGATGTACGTGGTCATGGACGGCTTCG 3253
>seq57188
Length=1203
Score = 120 bits (132), Expect = 1e-24
Identities = 182/258 (71%), Gaps = 6/258 (2%)
Strand=Plus/Plus
Query 119 GCCGTTCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGG 178
||| |||||| || | || | |||||||| || | ||||||||||| |||||||||||
Sbjct 874 GCCTTTCCTGCACTTTGCCCTCTGGATGGGGCCTGCGGGGTTGATCGCTATTCTCGCCGG 933
Query 179 CTGGTTCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGC 238
||| | || || || | || || |||||||||||||| ||||| ||| ||||||| ||
Sbjct 934 GTGGGTGACTACCGAGGTGGGTCGCCAGCCGTGGGTGGTTTACGGTCTGCTGCGCACCGC 993
Query 239 GGATGCGTCCTCCGGGCATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGT 298
|||||| ||||| || || ||||||||| | | ||| || ||| | |
Sbjct 994 CGATGCGGTTTCCGGTCACGGCGATTTGCAGATGAGCCTCAGCCTGCTGGCCTTCTTTAT 1053
Query 299 GGTGTACTTCGCGCTGTTCGGTGCCGG---TCTGGGCTACATGATGCGCCTGGTGCGCAA 355
|| |||| | || |||| || | ||| ||| ||| ||| |||| || | |||
Sbjct 1054 CGTCTACTGCTCGGTGTTTGGCGTCGGCTATCT---CTATATGGTGCGTTTGATCACCAA 1110
Query 356 AGGTCCGCAGACCCACGA 373
|| |||||| | |||||
Sbjct 1111 GGGGCCGCAGCCGCACGA 1128
>seq15944
Length=297
Score = 105 bits (116), Expect = 2e-20
Identities = 190/273 (70%), Gaps = 11/273 (4%)
Strand=Plus/Minus
Query 308 CGCGCTGTTCGGTGCCGGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTCCGCAGAC 367
|||| ||||||| ||||| | |||||| ||||||||||||||||||| || ||| ||
Sbjct 297 CGCGGTGTTCGGCGCCGGCTTCGGCTACGTGATGCGCCTGGTGCGCAAGGGGCCGGTCAC 238
Query 368 CCACGAAGGCGATGAGCCGACCCACGGTGGTCCTGG--CCAGAAACGCACGCCAGCCCGT 425
| || |||||| | | | | || || || || || | || || || || ||
Sbjct 237 CGGTGAGGGCGATCACCAGCATGAAGGCGGGCCGGGTACCCGGCAC--ACCCCGGCACGG 180
Query 426 CCGTTGTCTGCCGCCGATGATGGCAGCGATGACG---ACCACACCCACATCCA---GCAC 479
|| |||| || || | || ||| | |||| | || | | || | | ||
Sbjct 179 CCACTGTCGGCGCCCAAGGAGGGCCTGCACGACGGTGATCATGGCGGCGTCGAAGCGAAC 120
Query 480 AAG-GGGCATTGAGATGGGTATTGATCTTCCGCTGATCCGGGCCGTGATCATCATCTTCG 538
| |||||| | |||||||| ||||| || | ||| |||| ||||||||| |||| |
Sbjct 119 GGGAGGGCATGAACATGGGTATCGATCTGTCGATCATCTGGGCGGTGATCATCGTCTTTG 60
Query 539 GCATCATGATGTACGTGGTCATGGACGGCTTCG 571
|| | |||||||||||| |||||||||||||||
Sbjct 59 GCGTGATGATGTACGTGATCATGGACGGCTTCG 27
>seq416625
Length=319
Score = 87.8 bits (96), Expect = 6e-15
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 120 CCGTTCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGC 179
|||||||||| | || ||| ||||| || ||||| ||||||||||| | || |||
Sbjct 86 CCGTTCCTGTGGTTTGCTTTGCTCATGGGACCCTCCGGCCTGATCGCGATTTTAGCAGGC 145
Query 180 TGGTTCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCG 239
||||| || || |||||||| |||||||| ||||| || || ||| | ||| |||
Sbjct 146 TGGTTTACTACCGAAATCGGTCGTCAGCCCTGGGTAGTTTATGGCGTTCAGCGAACGATT 205
Query 240 GATGCG 245
||||||
Sbjct 206 GATGCG 211
>seq461798
Length=214
Score = 84.2 bits (92), Expect = 8e-14
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 493 ATGGGTATTGATCTTCCGCTGATCCGGGCCGTGATCATCATCTTCGGCATCATGATGTAC 552
|||||||| ||||| | | ||| |||| ||||||||| ||||||| | |||||||||
Sbjct 135 ATGGGTATCGATCTGTCAGTCATCTGGGCGGTGATCATCGTCTTCGGGGTGATGATGTAC 194
Query 553 GTGGTCATGGACGGCTTCG 571
||| |||||||||||||||
Sbjct 195 GTGATCATGGACGGCTTCG 213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1715733985504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |