Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01002049.1 Length=571 Score E Sequences producing significant alignments: (Bits) Value seq120195 185 3e-44 seq265555 161 3e-37 seq290634 154 5e-35 seq57188 120 1e-24 seq15944 105 2e-20 seq416625 87.8 6e-15 seq461798 84.2 8e-14 >seq120195 Length=404 Score = 185 bits (204), Expect = 3e-44 Identities = 159/192 (83%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 54 GATGATCTTCACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACG 113 ||||||| || ||||| | || |||| |||||| |||| || ||| || | ||| | Sbjct 1 GATGATCCTCGCCGGTGT-GTGGAGCCTGTGGCT-GCGCTGGCGCGGCAGCCTCTACCAG 58 Query 114 TCCAAGCCGTTCCTGTAC--CTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTC 171 || ||||||||||||| ||| | |||||||||||||||||||| ||||||| |||| Sbjct 59 TCGCGGCCGTTCCTGTACTTCTGCC--TGTGGATGGGCCCGTCCGGGCTGATCGCCATTC 116 Query 172 TCGCCGGCTGGTTCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGC 231 ||||||||||||||||||| || |||||||||||||||||||||||||||||| | |||| Sbjct 117 TCGCCGGCTGGTTCACCACCGAGATCGGCCGTCAGCCGTGGGTGGTCTACGGCATCATGC 176 Query 232 GCACGGCGGATG 243 |||| || |||| Sbjct 177 GCACCGCCGATG 188 Score = 107 bits (118), Expect = 7e-21 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 279 ACGCTGGTGTTGTTCGTGGTGGTGTACTTCGCGCTGTTCGGTGCCGGTCTGGGCTACATG 338 || |||||| ||||||||||||||||||||||| ||||||| || || | |||||| || Sbjct 297 ACCCTGGTGCTGTTCGTGGTGGTGTACTTCGCGGTGTTCGGCGCGGGCTTCGGCTACGTG 356 Query 339 ATGCGCCTGGTGCGCAAAGGTCCGCAGACCCACGAAGGCGAT 380 ||||||||||||||||| || ||| ||| ||| |||||| Sbjct 357 ATGCGCCTGGTGCGCAAGGGGCCGGTCACCGGCGAGGGCGAT 398 >seq265555 Length=416 Score = 161 bits (178), Expect = 3e-37 Identities = 159/201 (79%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63 |||||| ||| |||| |||||||||| ||| ||||| | |||| | ||||||||| || Sbjct 197 TCGACCATCGTGTTCTGGTCGTTCCGCATCATGGTCGCCATGGGCCTGCTGATGATCCTC 138 Query 64 ACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGT 123 ||||| | || |||| |||||| |||| || ||| || | ||| ||| |||| Sbjct 137 GCCGGTGT-GTGGAGCCTGTGGCT-GCGCTGGCGCGGCAGCCTCTACCAGTCGCGCCCGT 80 Query 124 TCCTGTAC--CTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTG 181 |||||||| ||| | |||||||||||||||||||| ||||||| || ||||||||||| Sbjct 79 TCCTGTACTTCTGCC--TGTGGATGGGCCCGTCCGGGCTGATCGCCATCCTCGCCGGCTG 22 Query 182 GTTCACCACGGAAATCGGCCG 202 ||||||||| || |||||||| Sbjct 21 GTTCACCACCGAGATCGGCCG 1 >seq290634 Length=4222 Score = 154 bits (170), Expect = 5e-35 Identities = 376/574 (66%), Gaps = 32/574 (6%) Strand=Plus/Plus Query 15 GTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTCACCGGTCTAGT 74 |||| |||||||||| ||| ||||| || |||| | ||||||||| | |||| || || Sbjct 2695 GTTCTGGTCGTTCCGCATCATGGTCGCCCTGGGCATGCTGATGATCGCCGCCGGCCT-GT 2753 Query 75 TCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGTTCCTGTACCTG 134 ||| ||||| |||| || ||| |||| ||| | | || | |||||| |||| Sbjct 2754 GGAGCGCCTGGCT-GCGCTGGCGCGGCAAGCTGTTCGAGACCCGCGCCTTCCTGCGCCTG 2812 Query 135 GCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGTTCACCACGGAA 194 | || ||||| ||| ||| | ||||| | || ||||| Sbjct 2813 GTCACCTGCATGGGACCGGTCGGTCTCATCGCCCTGCTGGCCGGNNNNNNNNNNNNNNNN 2872 Query 195 ATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATGCGTCCTCCGGG 254 ||||||||| | |||||||||||| ||||||| ||| | | ||| Sbjct 2873 ---------CAGCCGTGGATCGTCTACGGCCTGTTGCGCACCAAGGACGGGGTATCCAAC 2923 Query 255 CATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGGTGTACTTCGCGCTG 314 || ||| | ||| | | || || |||||| ||||||||||| || ||||| || Sbjct 2924 CACAGCGTCACCCAGCTCAGCATCACCCTGGTGGCCTTCGTGGTGGTCTATTTCGCCGTG 2983 Query 315 TTCGGTGCCGGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTCCGCAGACCCACGAA 374 ||||| ||| ||| | ||||| || | |||| |||||||| ||| ||| Sbjct 2984 TTCGGCATCGGCACCCTCTATGCGCTGCGCATGATCGGCAAGGGTCCGCACACCGGTGAA 3043 Query 375 GGCGATGAGCCGACCCACGGTGGTCCTGGCCAGAAACGCACGCCAGCCC----GTCCGTT 430 ||||| ||| ||| ||| || || ||| | || ||||| ||| ||||| | Sbjct 3044 GGCGACCTGCCCACCTCCGGCGGCCCGGGC----ACCGATCGCCATCCCAAGCGTCCGCT 3099 Query 431 GTCTGCCGCCGATGATGGCAGCGATGACGACCACACCCACATCCAGCACAAGGGGCATTG 490 ||| | |||||||| ||| || || ||| || || | ||||| | || | | Sbjct 3100 GTCCGGCGCCGATGGCGGCCTGGAAGAAGACAACCCCACCGACCAGCTGACCGGAGACCG 3159 Query 491 -AGATG------------GGTATTGATCTTCCGCTGATCCGGGCCGTGATCATCATCTTC 537 | ||| || || || || ||||||||| |||| | |||||||||||| Sbjct 3160 CACATGAACGGCATCCCTGGCATCGACCTCCCGCTGATCTGGGCGATCATCATCATCTTC 3219 Query 538 GGCATCATGATGTACGTGGTCATGGACGGCTTCG 571 ||| |||||||||||||||||||||||||||||| Sbjct 3220 GGCCTCATGATGTACGTGGTCATGGACGGCTTCG 3253 >seq57188 Length=1203 Score = 120 bits (132), Expect = 1e-24 Identities = 182/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 119 GCCGTTCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGG 178 ||| |||||| || | || | |||||||| || | ||||||||||| ||||||||||| Sbjct 874 GCCTTTCCTGCACTTTGCCCTCTGGATGGGGCCTGCGGGGTTGATCGCTATTCTCGCCGG 933 Query 179 CTGGTTCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGC 238 ||| | || || || | || || |||||||||||||| ||||| ||| ||||||| || Sbjct 934 GTGGGTGACTACCGAGGTGGGTCGCCAGCCGTGGGTGGTTTACGGTCTGCTGCGCACCGC 993 Query 239 GGATGCGTCCTCCGGGCATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGT 298 |||||| ||||| || || ||||||||| | | ||| || ||| | | Sbjct 994 CGATGCGGTTTCCGGTCACGGCGATTTGCAGATGAGCCTCAGCCTGCTGGCCTTCTTTAT 1053 Query 299 GGTGTACTTCGCGCTGTTCGGTGCCGG---TCTGGGCTACATGATGCGCCTGGTGCGCAA 355 || |||| | || |||| || | ||| ||| ||| ||| |||| || | ||| Sbjct 1054 CGTCTACTGCTCGGTGTTTGGCGTCGGCTATCT---CTATATGGTGCGTTTGATCACCAA 1110 Query 356 AGGTCCGCAGACCCACGA 373 || |||||| | ||||| Sbjct 1111 GGGGCCGCAGCCGCACGA 1128 >seq15944 Length=297 Score = 105 bits (116), Expect = 2e-20 Identities = 190/273 (70%), Gaps = 11/273 (4%) Strand=Plus/Minus Query 308 CGCGCTGTTCGGTGCCGGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTCCGCAGAC 367 |||| ||||||| ||||| | |||||| ||||||||||||||||||| || ||| || Sbjct 297 CGCGGTGTTCGGCGCCGGCTTCGGCTACGTGATGCGCCTGGTGCGCAAGGGGCCGGTCAC 238 Query 368 CCACGAAGGCGATGAGCCGACCCACGGTGGTCCTGG--CCAGAAACGCACGCCAGCCCGT 425 | || |||||| | | | | || || || || || | || || || || || Sbjct 237 CGGTGAGGGCGATCACCAGCATGAAGGCGGGCCGGGTACCCGGCAC--ACCCCGGCACGG 180 Query 426 CCGTTGTCTGCCGCCGATGATGGCAGCGATGACG---ACCACACCCACATCCA---GCAC 479 || |||| || || | || ||| | |||| | || | | || | | || Sbjct 179 CCACTGTCGGCGCCCAAGGAGGGCCTGCACGACGGTGATCATGGCGGCGTCGAAGCGAAC 120 Query 480 AAG-GGGCATTGAGATGGGTATTGATCTTCCGCTGATCCGGGCCGTGATCATCATCTTCG 538 | |||||| | |||||||| ||||| || | ||| |||| ||||||||| |||| | Sbjct 119 GGGAGGGCATGAACATGGGTATCGATCTGTCGATCATCTGGGCGGTGATCATCGTCTTTG 60 Query 539 GCATCATGATGTACGTGGTCATGGACGGCTTCG 571 || | |||||||||||| ||||||||||||||| Sbjct 59 GCGTGATGATGTACGTGATCATGGACGGCTTCG 27 >seq416625 Length=319 Score = 87.8 bits (96), Expect = 6e-15 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 120 CCGTTCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGC 179 |||||||||| | || ||| ||||| || ||||| ||||||||||| | || ||| Sbjct 86 CCGTTCCTGTGGTTTGCTTTGCTCATGGGACCCTCCGGCCTGATCGCGATTTTAGCAGGC 145 Query 180 TGGTTCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCG 239 ||||| || || |||||||| |||||||| ||||| || || ||| | ||| ||| Sbjct 146 TGGTTTACTACCGAAATCGGTCGTCAGCCCTGGGTAGTTTATGGCGTTCAGCGAACGATT 205 Query 240 GATGCG 245 |||||| Sbjct 206 GATGCG 211 >seq461798 Length=214 Score = 84.2 bits (92), Expect = 8e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 493 ATGGGTATTGATCTTCCGCTGATCCGGGCCGTGATCATCATCTTCGGCATCATGATGTAC 552 |||||||| ||||| | | ||| |||| ||||||||| ||||||| | ||||||||| Sbjct 135 ATGGGTATCGATCTGTCAGTCATCTGGGCGGTGATCATCGTCTTCGGGGTGATGATGTAC 194 Query 553 GTGGTCATGGACGGCTTCG 571 ||| ||||||||||||||| Sbjct 195 GTGATCATGGACGGCTTCG 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1715733985504