Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01002051.1 Length=353 Score E Sequences producing significant alignments: (Bits) Value seq234022 340 4e-91 seq471320 325 8e-87 seq211407 170 4e-40 seq51314 132 1e-28 seq28652 73.4 8e-11 >seq234022 Length=2007 Score = 340 bits (376), Expect = 4e-91 Identities = 287/353 (81%), Gaps = 0/353 (0%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||||||||||||||||||||| ||||||||||| ||||| || || ||||||||||| Sbjct 1222 CGACCGCCTGCGCCATGTGGCCGAGCGCGCCGAACTGGGCGAGAAGCGTGAAGCGATCAT 1281 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120 |||||||||||| |||||| ||||||||||||||||||| || ||||||||| | ||||| Sbjct 1282 CGCCGTGACCATCCCCGAGCAGCCCGGCAGCTTCAAGGCTTTTTGCGAGGCCATCGGCAA 1341 Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGT 180 ||| ||||||||||| ||||||||||| | ||| | | | |||||||||||||| || Sbjct 1342 GCGGCAGATCACCGAGTTCAACTACCGCTATCACCAGGACGGTGAGGCGCACATCTTCGT 1401 Query 181 CGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGA 240 |||||||||||||||||| || | |||||| || || ||| | | | |||| | Sbjct 1402 CGGCGTGCAGACCCACCCGGAGAACGACCCGCGTGCGGCACTGGTGGAAAACCTGCGCAG 1461 Query 241 GCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCA 300 ||||| ||||||||||| ||||||||||| || || |||||||||||||| |||||||| Sbjct 1462 TCAGGGCTTCCCGGTGCTCGACCTGACCGACAACGAACTGGCCAAGCTGCATATCCGCCA 1521 Query 301 TATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTTCG 353 | || ||||||||||||||| || || ||| ||||||||||||| Sbjct 1522 CACCGTGGGCGGCCATGCGGCGGCGGTACCGAACGAATGCGTGTTCCGCTTCG 1574 >seq471320 Length=3567 Score = 325 bits (360), Expect = 8e-87 Identities = 286/354 (81%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||||||||||||||| ||||| ||||| ||||||||||| ||| ||||| |||||||| Sbjct 2981 CGACCGCCTGCGCCACGTGGCCGAGCGTGCCGAGCTGGGGGAAAAGCGCGAGGCGATCAT 2922 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120 |||||||||||| || ||| || ||||||||||||||||||||||||||| | ||||| Sbjct 2921 CGCCGTGACCATCCCGGAGCGCCCGGGCAGCTTCAAGGCGTTCTGCGAGGCCATCGGCAA 2862 Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGT 180 ||| ||||||||||||||||||||||| | |||| | |||||||||||||||| || Sbjct 2861 GCGGCAGATCACCGAATTCAACTACCGCTACCACCAGGATGGCGAGGCGCACATCTTCGT 2802 Query 181 CGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGA 240 |||||||||||||||||| || | ||||||||| || || | | | |||| | Sbjct 2801 CGGCGTGCAGACCCACCCGGAGAACGACCCCCGTGCGGCCTTGGTGGAAAACCTGCGTGG 2742 Query 241 GCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCA 300 ||||| |||||||| || ||||||||||| || || |||||||||||||| |||||||| Sbjct 2741 CCAGGGCTTCCCGGTACTCGACCTGACCGACAACGAACTGGCCAAGCTGCATATCCGCCA 2682 Query 301 TATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTG-GTGTTCCGCTTCG 353 | || ||||||||||| ||| || | | |||| ||||||||||||| Sbjct 2681 CACCGTGGGCGGCCATGCCGCGGCGGTGCCGGACG-AGTGCGTGTTCCGCTTCG 2629 >seq211407 Length=234 Score = 170 bits (188), Expect = 4e-40 Identities = 157/199 (79%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||| || ||| | || ||||| |||||||| |||||||| || || ||||| ||||| Sbjct 16 CGATCGGCTGAGACACGTGGCCGAGCGCGCGGAGCTGGGCGAGCAGCGTGAAGCCATCAT 75 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120 |||||||||||| |||||| ||| |||||||| || ||||| ||||| | || Sbjct 76 CGCCGTGACCATCCCCGAGCGGCCGGGCAGCTTTCGCGCCTTCTGTGAGGCGCTCGGTCG 135 Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGT 180 ||| |||||||||||||||||||| || | |||| |||| |||||||||||||| || Sbjct 136 GCGGCAGATCACCGAATTCAACTATCGCTACCACAGCGGCGAAGAGGCGCACATCTTCGT 195 Query 181 CGGCGTGCAGACCCACCCC 199 |||||| |||||||| ||| Sbjct 196 CGGCGTCCAGACCCATCCC 214 >seq51314 Length=1048 Score = 132 bits (146), Expect = 1e-28 Identities = 91/103 (88%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||| Sbjct 946 CGACCGCCTGCGCCATGTGGCCGAGCGCGCCGAGCTGGGCGAAAAGCGCGAGGCGATCAT 1005 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTC 103 |||||||||||| || ||| || |||||||||||||||||| Sbjct 1006 CGCCGTGACCATCCCGGAGCGCCCGGGCAGCTTCAAGGCGTTC 1048 >seq28652 Length=693 Score = 73.4 bits (80), Expect = 8e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 242 CAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCAT 301 ||||| ||| | ||||||||||||| | | |||||||||||| |||| | ||||| Sbjct 679 CAGGGCTTCGCCACGCTGGACCTGACCCACGACGAGCTGGCCAAGGAGCACGTGCGCCAC 620 Query 302 ATGGTCGGCGGCCATGCGGC 321 ||||||||||| ||| |||| Sbjct 619 ATGGTCGGCGGGCATTCGGC 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1021800759456