Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01002051.1
Length=353
Score E
Sequences producing significant alignments: (Bits) Value
seq234022 340 4e-91
seq471320 325 8e-87
seq211407 170 4e-40
seq51314 132 1e-28
seq28652 73.4 8e-11
>seq234022
Length=2007
Score = 340 bits (376), Expect = 4e-91
Identities = 287/353 (81%), Gaps = 0/353 (0%)
Strand=Plus/Plus
Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60
||||||||||||||||||||| ||||||||||| ||||| || || |||||||||||
Sbjct 1222 CGACCGCCTGCGCCATGTGGCCGAGCGCGCCGAACTGGGCGAGAAGCGTGAAGCGATCAT 1281
Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120
|||||||||||| |||||| ||||||||||||||||||| || ||||||||| | |||||
Sbjct 1282 CGCCGTGACCATCCCCGAGCAGCCCGGCAGCTTCAAGGCTTTTTGCGAGGCCATCGGCAA 1341
Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGT 180
||| ||||||||||| ||||||||||| | ||| | | | |||||||||||||| ||
Sbjct 1342 GCGGCAGATCACCGAGTTCAACTACCGCTATCACCAGGACGGTGAGGCGCACATCTTCGT 1401
Query 181 CGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGA 240
|||||||||||||||||| || | |||||| || || ||| | | | |||| |
Sbjct 1402 CGGCGTGCAGACCCACCCGGAGAACGACCCGCGTGCGGCACTGGTGGAAAACCTGCGCAG 1461
Query 241 GCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCA 300
||||| ||||||||||| ||||||||||| || || |||||||||||||| ||||||||
Sbjct 1462 TCAGGGCTTCCCGGTGCTCGACCTGACCGACAACGAACTGGCCAAGCTGCATATCCGCCA 1521
Query 301 TATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTTCG 353
| || ||||||||||||||| || || ||| |||||||||||||
Sbjct 1522 CACCGTGGGCGGCCATGCGGCGGCGGTACCGAACGAATGCGTGTTCCGCTTCG 1574
>seq471320
Length=3567
Score = 325 bits (360), Expect = 8e-87
Identities = 286/354 (81%), Gaps = 2/354 (1%)
Strand=Plus/Minus
Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60
||||||||||||||| ||||| ||||| ||||||||||| ||| ||||| ||||||||
Sbjct 2981 CGACCGCCTGCGCCACGTGGCCGAGCGTGCCGAGCTGGGGGAAAAGCGCGAGGCGATCAT 2922
Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120
|||||||||||| || ||| || ||||||||||||||||||||||||||| | |||||
Sbjct 2921 CGCCGTGACCATCCCGGAGCGCCCGGGCAGCTTCAAGGCGTTCTGCGAGGCCATCGGCAA 2862
Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGT 180
||| ||||||||||||||||||||||| | |||| | |||||||||||||||| ||
Sbjct 2861 GCGGCAGATCACCGAATTCAACTACCGCTACCACCAGGATGGCGAGGCGCACATCTTCGT 2802
Query 181 CGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGA 240
|||||||||||||||||| || | ||||||||| || || | | | |||| |
Sbjct 2801 CGGCGTGCAGACCCACCCGGAGAACGACCCCCGTGCGGCCTTGGTGGAAAACCTGCGTGG 2742
Query 241 GCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCA 300
||||| |||||||| || ||||||||||| || || |||||||||||||| ||||||||
Sbjct 2741 CCAGGGCTTCCCGGTACTCGACCTGACCGACAACGAACTGGCCAAGCTGCATATCCGCCA 2682
Query 301 TATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTG-GTGTTCCGCTTCG 353
| || ||||||||||| ||| || | | |||| |||||||||||||
Sbjct 2681 CACCGTGGGCGGCCATGCCGCGGCGGTGCCGGACG-AGTGCGTGTTCCGCTTCG 2629
>seq211407
Length=234
Score = 170 bits (188), Expect = 4e-40
Identities = 157/199 (79%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60
||| || ||| | || ||||| |||||||| |||||||| || || ||||| |||||
Sbjct 16 CGATCGGCTGAGACACGTGGCCGAGCGCGCGGAGCTGGGCGAGCAGCGTGAAGCCATCAT 75
Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120
|||||||||||| |||||| ||| |||||||| || ||||| ||||| | ||
Sbjct 76 CGCCGTGACCATCCCCGAGCGGCCGGGCAGCTTTCGCGCCTTCTGTGAGGCGCTCGGTCG 135
Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGT 180
||| |||||||||||||||||||| || | |||| |||| |||||||||||||| ||
Sbjct 136 GCGGCAGATCACCGAATTCAACTATCGCTACCACAGCGGCGAAGAGGCGCACATCTTCGT 195
Query 181 CGGCGTGCAGACCCACCCC 199
|||||| |||||||| |||
Sbjct 196 CGGCGTCCAGACCCATCCC 214
>seq51314
Length=1048
Score = 132 bits (146), Expect = 1e-28
Identities = 91/103 (88%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60
||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||
Sbjct 946 CGACCGCCTGCGCCATGTGGCCGAGCGCGCCGAGCTGGGCGAAAAGCGCGAGGCGATCAT 1005
Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTC 103
|||||||||||| || ||| || ||||||||||||||||||
Sbjct 1006 CGCCGTGACCATCCCGGAGCGCCCGGGCAGCTTCAAGGCGTTC 1048
>seq28652
Length=693
Score = 73.4 bits (80), Expect = 8e-11
Identities = 64/80 (80%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 242 CAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCAT 301
||||| ||| | ||||||||||||| | | |||||||||||| |||| | |||||
Sbjct 679 CAGGGCTTCGCCACGCTGGACCTGACCCACGACGAGCTGGCCAAGGAGCACGTGCGCCAC 620
Query 302 ATGGTCGGCGGCCATGCGGC 321
||||||||||| ||| ||||
Sbjct 619 ATGGTCGGCGGGCATTCGGC 600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1021800759456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |