Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01002062.1 Length=351 Score E Sequences producing significant alignments: (Bits) Value seq259212 93.3 9e-17 seq59655 93.3 9e-17 >seq259212 Length=711 Score = 93.3 bits (102), Expect = 9e-17 Identities = 125/173 (72%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 35 ACGGTGCCGGTGTACCAGCGGGGTGATTTCCACCACGTCGCCGTTCACATAGGCGTCATC 94 |||||||||||| | | |||||||||| | ||||| || |||| ||| |||||||| || Sbjct 444 ACGGTGCCGGTG-ATCTGCGGGGTGATCTGCACCAGGTTGCCGCCCACGTAGGCGTCGTC 502 Query 95 GGTGCTTTCATTGAAGCGCCCGTAGAACTCATACCAGGCCCACACGCCCACCACACTGAG 154 ||| ||| | |||||||||||||| || | |||| | | | || | | || Sbjct 503 GGTCTCTTCGTAGAAGCGCCCGTAGAGTTCGTGGTAGGCGAAGATGGCCGCGCTGCACAG 562 Query 155 GATGACGATCAGCGCCAGGCCGATCAGCATCACTTTGCGTTTGCGCGGGTTGG 207 | |||||| | ||| ||||| ||||||| |||||| |||| || |||| Sbjct 563 CACGACGATGACCGCGAGGCCTATCAGCAGGCGTTTGCGCTTGCCCGAATTGG 615 >seq59655 Length=1840 Score = 93.3 bits (102), Expect = 9e-17 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 6 GTCACCATCGTCGGCGCCGAATGCCGACCACGGTGCCGGTGTACCAGCGGGGTGATTTCC 65 ||| || ||||| || ||| ||| | |||||||||||| | | |||||||||| | | Sbjct 1206 GTCGCCGTCGTCCACGGCGA-TGCGGGTGACGGTGCCGGTG-ATCTGCGGGGTGATCTGC 1263 Query 66 ACCACGTCGCCGTTCACATAGGCGTCATCGGTGCTTTCATTGAAGCGCCCGTAGAACTCA 125 |||| || |||| ||| ||||| || ||||| ||||| |||||||||||| | ||| Sbjct 1264 ACCAGGTTGCCGCCCACGTAGGCATCGTCGGTCTCTTCATAGAAGCGCCCGTACAGCTCG 1323 Query 126 TACCAGGCCCACACGCCCACCACACTGAGGATGACGATCAGCGCC-AGGCCGATCAGCAT 184 | |||| | ||| || | | || | |||||| | |||| ||||| ||||||| Sbjct 1324 TGATAGGCGAAGACGGCCGCGCTGCACAGCACGACGATGA-CGCCGAGGCCAATCAGCAG 1382 Query 185 CACTTTGCGTTTGCGCG 201 |||||| |||| || Sbjct 1383 GCGTTTGCGCTTGCCCG 1399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1015434399584