Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01002110.1
Length=382
Score E
Sequences producing significant alignments: (Bits) Value
seq129321 356 5e-96
seq396569 289 6e-76
seq494999 217 3e-54
seq409824 181 2e-43
seq496634 125 2e-26
seq187618 116 8e-24
seq81148 109 1e-21
seq77826 107 4e-21
seq309437 98.7 2e-18
seq2955 84.2 5e-14
seq199447 80.6 6e-13
>seq129321
Length=474
Score = 356 bits (394), Expect = 5e-96
Identities = 271/320 (85%), Gaps = 0/320 (0%)
Strand=Plus/Plus
Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122
|||| ||||||| || | |||| || |||||||||||| || |||||||| | |||||||
Sbjct 29 TCCATGGTGCCGGTGATCAGCAGCGGCATCGCCAGTTCGTCGAGGCCATCACGGCGCCCG 88
Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182
|||||||||||| |||| ||| || ||||| ||||||||||| ||||||||||| |||
Sbjct 89 TCCTGGGGCATCAGCGACAGCGAGTAGCTGACGTCCAGCATGCGCGCCAGGTTCTCCGCG 148
Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATACTCAGC 242
|||||||||||||| |||||||| || || || | || ||||| ||||| |||||
Sbjct 149 CGCTCCAGGTAACGGGACATCCAGTAAAGGTCGGAGGCGGTTCTCGATAGCATGCTCAGT 208
Query 243 CCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGC 302
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 209 CCTCCACCACCCAGGTGTCCTTGGTACCGCCGCCTTGCGACGAGTTGACCACCAGCGAGC 268
Query 303 CTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAGA 362
|||| ||||||||||||||||| ||||||||||| | ||| || |||||||| || |
Sbjct 269 CTTCGCGCAGCGCCACGCGGGTCAGACCACCGGGCACGATGCGCGTCTCCTTGCCGGACA 328
Query 363 GCACGAAGGGTCGCAAGTCG 382
|||||||||| |||| ||||
Sbjct 329 GCACGAAGGGGCGCAGGTCG 348
>seq396569
Length=5993
Score = 289 bits (320), Expect = 6e-76
Identities = 311/420 (74%), Gaps = 40/420 (10%)
Strand=Plus/Minus
Query 3 AGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGCTG 62
|| || ||||| |||| ||||| ||||| | ||| | ||| || | | ||||
Sbjct 2870 AGGGCGAAGAAATGCAGGATGCGCTCGGCGTGCAGCGCACCGTGGCGTTGCTGGTAATCC 2811
Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122
|||||||||||| || | |||| || |||||||||||| || ||||| || | |||||||
Sbjct 2810 TCCAGGGTGCCGGTGATCAGCAGCGGCATCGCCAGTTCGTCGAGGCCGTCACGGCGCCCG 2751
Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182
|||||||||||| |||| ||| || ||||| ||||||||||| |||||||| || ||
Sbjct 2750 TCCTGGGGCATCAGCGACAGCGAGTAGCTGACGTCCAGCATGCGCGCCAGGTTTTCCGCA 2691
Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCAT-ACTCAG 241
||||||||||| || |||||||| |||||||| | || ||||||| || ||| |||||
Sbjct 2690 CGCTCCAGGTAGCGGGACATCCAGTACAGATCGGAGGCGGTTCTACTCAACATGTCTCAG 2631
Query 242 CCCTCCACCACCCAGGTGTCCTTGGT-------------------TCCA----------- 271
||||||||||||||||||||||||| |||
Sbjct 2630 TCCTCCACCACCCAGGTGTCCTTGGTACCGCCNNNNNNNNNNNNNNCCACCCAGGTGTCC 2571
Query 272 ---------CCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGG 322
|||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 2570 TTGGTACCGCCGCCTTGCGACGAGTTGACCACCAGCGAGCCTTCGCGCAGCGCCACCCGG 2511
Query 323 GTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAGAGCACGAAGGGTCGCAAGTCG 382
|||| ||| || ||||| | ||| ||||||||||| || ||||||||||| |||| ||||
Sbjct 2510 GTCAGGCCGCCCGGCACGATGCGCGTTTCCTTGCCGGACAGCACGAAGGGACGCAGGTCG 2451
>seq494999
Length=200
Score = 217 bits (240), Expect = 3e-54
Identities = 167/197 (85%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 150 CTGACTTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATAC 209
||||| ||||||||||| |||||||| || || ||||||||||| || |||||||| |||
Sbjct 2 CTGACGTCCAGCATGCGCGCCAGGTTTTCCGCACGCTCCAGGTAGCGGGACATCCAGTAC 61
Query 210 AGATCTGCAGCTGTTCTACGCAGCATA-CTCAGCCCTCCACCACCCAGGTGTCCTTGGTT 268
|| || | || ||||||| || ||| ||||| |||||||||||||||||||||||||
Sbjct 62 AGGTCAGAGGCGGTTCTACTCAACATGGCTCAGTCCTCCACCACCCAGGTGTCCTTGGTA 121
Query 269 CCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAG 328
|| ||||| || ||||||||||| |||||||||||||| |||||||||||| |||| |
Sbjct 122 CCGCCGCCCTGGGACGAGTTGACCACCAGCGAGCCTTCACGCAGCGCCACGCGAGTCAGG 181
Query 329 CCACCGGGCACCAGGCG 345
||||||||||| | |||
Sbjct 182 CCACCGGGCACGATGCG 198
>seq409824
Length=1459
Score = 181 bits (200), Expect = 2e-43
Identities = 180/233 (77%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 3 AGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGCTG 62
|| || |||||||||| || ||| |||| | ||||| |||| ||| |||||
Sbjct 229 AGGGCGAAGAAGTGCAGCAGGCGCTCGGGGTGCAGGGCGCCGTGCTTTTCCCGGTAGTCA 288
Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122
|||||||||||| || |||||| || ||| ||||| || |||||||| ||| |||||
Sbjct 289 TCCAGGGTGCCGGTGATGAGCAGCGGCATGGCCAGCTCGTCCAGGCCTCCGCCCTGCCCG 348
Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182
||| ||||||| |||| |||||| ||||| |||||||| || || || |||||||||
Sbjct 349 CTCTGCGGCATCATCGACAGCGAATAGCTGACGTCCAGCATCCGCGCGAGATTCTCGGCG 408
Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCAT 235
|||||||||| || |||||||| |||||||| ||||| || | || || |||
Sbjct 409 CGCTCCAGGTTGCGGGACATCCAGTACAGATCGGCAGCGGTACGACTCAACAT 461
Score = 131 bits (144), Expect = 4e-28
Identities = 118/145 (81%), Gaps = 4/145 (3%)
Strand=Plus/Plus
Query 240 AGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCG 299
|| ||| ||||||||||||||||||||| || ||||| || || || || || |||||||
Sbjct 526 AGTCCTGCACCACCCAGGTGTCCTTGGTGCCGCCGCCCTGGGAGGAATTCACCACCAGCG 585
Query 300 AGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGT-TTCCTTGCCC 358
||||||| ||| || || ||||||| |||||| ||||||||||| || || | ||||
Sbjct 586 AGCCTTCGCGCAGGGCGACCCGGGTCAGGCCACCAGGCACCAGGCGCGTCTTGC--GCCC 643
Query 359 -GAGAGCACGAAGGGTCGCAAGTCG 382
|| ||||||||||| |||| ||||
Sbjct 644 GGACAGCACGAAGGGCCGCAGGTCG 668
>seq496634
Length=334
Score = 125 bits (138), Expect = 2e-26
Identities = 90/104 (87%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 238 TCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAG 297
|||| |||||| |||||||||||||||||| || ||||| ||||||||||| || |||||
Sbjct 301 TCAGGCCTCCATCACCCAGGTGTCCTTGGTCCCGCCGCCCTGCGACGAGTTCACCACCAG 242
Query 298 CGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCA 341
||||||||| || || |||||||||| ||||||||||||||
Sbjct 241 CGAGCCTTCGCGCAATGCGACGCGGGTCAGGCCACCGGGCACCA 198
>seq187618
Length=258
Score = 116 bits (128), Expect = 8e-24
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 173 GTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAG 232
||| ||||||||||||||||| || ||||||| |||||| | || || | | |||
Sbjct 251 GTTTTCGGCGCGCTCCAGGTAGCGGCACATCCAGAACAGATTATCGGCGGTACGGCTCAG 192
Query 233 CATACTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACG 292
||| | | |||||| |||||||||||||||||||| || || || ||||||
Sbjct 191 CATGATGCGTCCTCCAGTACCCAGGTGTCCTTGGTTCCGCCACCCTGGCTGCTGTTGACC 132
Query 293 ACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCC 352
|||||||| ||||| ||||||||||||| || || || || || ||| | |||
Sbjct 131 ACCAGCGATCCTTCGCGCAGCGCCACGCGGCACAGCCCGCCAGGGACGGAACGGATGTCC 72
Query 353 TTGCCCGAGAGCACGAAGGGTCGCAAGTC 381
||||| | || || | || |||| |||
Sbjct 71 TTGCCACACAGTACATATGGGCGCAGGTC 43
>seq81148
Length=434
Score = 109 bits (120), Expect = 1e-21
Identities = 138/187 (74%), Gaps = 7/187 (4%)
Strand=Plus/Minus
Query 156 TCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGATC- 214
|||| || || ||| ||||||||||||||| | || ||| |||||| |||| |
Sbjct 288 TCCATCAGCCGGGCCGTGTTCTCGGCGCGCTCGATATAGCGCTGCATCCAGAACAGCCCG 229
Query 215 --TGCAGCTGTTCT---ACGCAGCATACTCAGCCCTCCACCACCCAGGTGTCCTTGGTTC 269
||||| || | || |||| |||| |||||| ||||| ||||||||||| |
Sbjct 228 TTTGCAGTACGTCCCAAAAGCGGCATG-TCAGTCCTCCAGAACCCATGTGTCCTTGGTGC 170
Query 270 CACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGC 329
| ||||| || ||| ||||||||||| ||||||||||||| ||||||||||| | |
Sbjct 169 CGCCGCCCTGGCTCGAATTGACGACCAGAGAGCCTTCCTTCAAGGCCACGCGGGTGAGCC 110
Query 330 CACCGGG 336
| |||||
Sbjct 109 CGCCGGG 103
>seq77826
Length=1655
Score = 107 bits (118), Expect = 4e-21
Identities = 129/174 (74%), Gaps = 1/174 (1%)
Strand=Plus/Minus
Query 164 GCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGT 223
||| || | ||| ||||||||||| | || || ||||||| || || | || ||
Sbjct 552 GCGCGCGATGTTTTCGGCGCGCTCGATATAGCGGAACATCCAGTAGAGCCCGTTTGCAGT 493
Query 224 TCTACGCAGCATA-CTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGA 282
||| | || ||| ||||| |||||| ||||||||||| ||||| || || |||||
Sbjct 492 TCTTCCCAACATGGCTCAGTCCTCCAGTACCCAGGTGTCTTTGGTGCCGCCACCTTGGCT 433
Query 283 CGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGG 336
|| |||||||| ||||| || | ||| || |||||||||||||| || || ||
Sbjct 432 GGAATTGACGACGAGCGAACCCTGCTTGAGGGCCACGCGGGTCAAACCGCCTGG 379
>seq309437
Length=282
Score = 98.7 bits (108), Expect = 2e-18
Identities = 91/114 (80%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 224 TCTACGCAGCATA-CTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGA 282
||| | |||||| ||||| |||||| ||||| ||||||||||| || || || ||
Sbjct 282 TCTTCCCAGCATGGCTCAGTCCTCCAGTACCCACGTGTCCTTGGTGCCGCCACCCTGGCT 223
Query 283 CGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGG 336
||| ||||||||||| ||||| | |||||| ||||||||||||| || |||||
Sbjct 222 CGAATTGACGACCAGAGAGCCCTGCTTCAGGGCCACGCGGGTCAGACCGCCGGG 169
>seq2955
Length=216
Score = 84.2 bits (92), Expect = 5e-14
Identities = 105/142 (74%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 153 ACTTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGA 212
|||||||||| ||| || ||||||||| ||||||| || || | ||||| ||||
Sbjct 75 ACTTCCAGCAGGCGGGCGGTGTTCTCGGCCCGCTCCATATAGCGGGCGATCCAGAACAGG 134
Query 213 TCTGCAGCTGTTCTACGCAGCATACTCAGCCCTCCACCA---CCCAGGTGTCCTTGGTTC 269
| || || || | | |||||| ||| | |||| ||| |||||||||||||| |
Sbjct 135 TTGGCGGCGGTGCGGCTCAGCATG-TCATCACTCCGCCAGAACCCAGGTGTCCTTGACCC 193
Query 270 CACCGCCTTGCGACGAGTTGAC 291
| ||||| ||||||||||| ||
Sbjct 194 CGCCGCCCTGCGACGAGTTCAC 215
>seq199447
Length=2507
Score = 80.6 bits (88), Expect = 6e-13
Identities = 73/92 (79%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 250 CACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTT 309
|||||| |||||||| | || ||||| || || ||||||||||| ||| ||| ||||
Sbjct 965 CACCCACGTGTCCTTCGAGCCGCCGCCCTGGGAGGAGTTGACGACGAGCTGGCCCTCCTG 906
Query 310 CAGCGCCACGCGGGTCAAGCCACCGGGCACCA 341
|||||||||||||||| || || |||| ||
Sbjct 905 GAGCGCCACGCGGGTCAGACCGCCCGGCAGCA 874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1114112977600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |