Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq129321 356 5e-96 seq396569 289 6e-76 seq494999 217 3e-54 seq409824 181 2e-43 seq496634 125 2e-26 seq187618 116 8e-24 seq81148 109 1e-21 seq77826 107 4e-21 seq309437 98.7 2e-18 seq2955 84.2 5e-14 seq199447 80.6 6e-13 >seq129321 Length=474 Score = 356 bits (394), Expect = 5e-96 Identities = 271/320 (85%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122 |||| ||||||| || | |||| || |||||||||||| || |||||||| | ||||||| Sbjct 29 TCCATGGTGCCGGTGATCAGCAGCGGCATCGCCAGTTCGTCGAGGCCATCACGGCGCCCG 88 Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182 |||||||||||| |||| ||| || ||||| ||||||||||| ||||||||||| ||| Sbjct 89 TCCTGGGGCATCAGCGACAGCGAGTAGCTGACGTCCAGCATGCGCGCCAGGTTCTCCGCG 148 Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATACTCAGC 242 |||||||||||||| |||||||| || || || | || ||||| ||||| ||||| Sbjct 149 CGCTCCAGGTAACGGGACATCCAGTAAAGGTCGGAGGCGGTTCTCGATAGCATGCTCAGT 208 Query 243 CCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGC 302 ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| Sbjct 209 CCTCCACCACCCAGGTGTCCTTGGTACCGCCGCCTTGCGACGAGTTGACCACCAGCGAGC 268 Query 303 CTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAGA 362 |||| ||||||||||||||||| ||||||||||| | ||| || |||||||| || | Sbjct 269 CTTCGCGCAGCGCCACGCGGGTCAGACCACCGGGCACGATGCGCGTCTCCTTGCCGGACA 328 Query 363 GCACGAAGGGTCGCAAGTCG 382 |||||||||| |||| |||| Sbjct 329 GCACGAAGGGGCGCAGGTCG 348 >seq396569 Length=5993 Score = 289 bits (320), Expect = 6e-76 Identities = 311/420 (74%), Gaps = 40/420 (10%) Strand=Plus/Minus Query 3 AGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGCTG 62 || || ||||| |||| ||||| ||||| | ||| | ||| || | | |||| Sbjct 2870 AGGGCGAAGAAATGCAGGATGCGCTCGGCGTGCAGCGCACCGTGGCGTTGCTGGTAATCC 2811 Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122 |||||||||||| || | |||| || |||||||||||| || ||||| || | ||||||| Sbjct 2810 TCCAGGGTGCCGGTGATCAGCAGCGGCATCGCCAGTTCGTCGAGGCCGTCACGGCGCCCG 2751 Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182 |||||||||||| |||| ||| || ||||| ||||||||||| |||||||| || || Sbjct 2750 TCCTGGGGCATCAGCGACAGCGAGTAGCTGACGTCCAGCATGCGCGCCAGGTTTTCCGCA 2691 Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCAT-ACTCAG 241 ||||||||||| || |||||||| |||||||| | || ||||||| || ||| ||||| Sbjct 2690 CGCTCCAGGTAGCGGGACATCCAGTACAGATCGGAGGCGGTTCTACTCAACATGTCTCAG 2631 Query 242 CCCTCCACCACCCAGGTGTCCTTGGT-------------------TCCA----------- 271 ||||||||||||||||||||||||| ||| Sbjct 2630 TCCTCCACCACCCAGGTGTCCTTGGTACCGCCNNNNNNNNNNNNNNCCACCCAGGTGTCC 2571 Query 272 ---------CCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGG 322 |||||||||||||||||||| |||||||||||||| ||||||||| ||| Sbjct 2570 TTGGTACCGCCGCCTTGCGACGAGTTGACCACCAGCGAGCCTTCGCGCAGCGCCACCCGG 2511 Query 323 GTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGAGAGCACGAAGGGTCGCAAGTCG 382 |||| ||| || ||||| | ||| ||||||||||| || ||||||||||| |||| |||| Sbjct 2510 GTCAGGCCGCCCGGCACGATGCGCGTTTCCTTGCCGGACAGCACGAAGGGACGCAGGTCG 2451 >seq494999 Length=200 Score = 217 bits (240), Expect = 3e-54 Identities = 167/197 (85%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 150 CTGACTTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATAC 209 ||||| ||||||||||| |||||||| || || ||||||||||| || |||||||| ||| Sbjct 2 CTGACGTCCAGCATGCGCGCCAGGTTTTCCGCACGCTCCAGGTAGCGGGACATCCAGTAC 61 Query 210 AGATCTGCAGCTGTTCTACGCAGCATA-CTCAGCCCTCCACCACCCAGGTGTCCTTGGTT 268 || || | || ||||||| || ||| ||||| ||||||||||||||||||||||||| Sbjct 62 AGGTCAGAGGCGGTTCTACTCAACATGGCTCAGTCCTCCACCACCCAGGTGTCCTTGGTA 121 Query 269 CCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAG 328 || ||||| || ||||||||||| |||||||||||||| |||||||||||| |||| | Sbjct 122 CCGCCGCCCTGGGACGAGTTGACCACCAGCGAGCCTTCACGCAGCGCCACGCGAGTCAGG 181 Query 329 CCACCGGGCACCAGGCG 345 ||||||||||| | ||| Sbjct 182 CCACCGGGCACGATGCG 198 >seq409824 Length=1459 Score = 181 bits (200), Expect = 2e-43 Identities = 180/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 3 AGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGCTG 62 || || |||||||||| || ||| |||| | ||||| |||| ||| ||||| Sbjct 229 AGGGCGAAGAAGTGCAGCAGGCGCTCGGGGTGCAGGGCGCCGTGCTTTTCCCGGTAGTCA 288 Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122 |||||||||||| || |||||| || ||| ||||| || |||||||| ||| ||||| Sbjct 289 TCCAGGGTGCCGGTGATGAGCAGCGGCATGGCCAGCTCGTCCAGGCCTCCGCCCTGCCCG 348 Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182 ||| ||||||| |||| |||||| ||||| |||||||| || || || ||||||||| Sbjct 349 CTCTGCGGCATCATCGACAGCGAATAGCTGACGTCCAGCATCCGCGCGAGATTCTCGGCG 408 Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCAT 235 |||||||||| || |||||||| |||||||| ||||| || | || || ||| Sbjct 409 CGCTCCAGGTTGCGGGACATCCAGTACAGATCGGCAGCGGTACGACTCAACAT 461 Score = 131 bits (144), Expect = 4e-28 Identities = 118/145 (81%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 240 AGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCG 299 || ||| ||||||||||||||||||||| || ||||| || || || || || ||||||| Sbjct 526 AGTCCTGCACCACCCAGGTGTCCTTGGTGCCGCCGCCCTGGGAGGAATTCACCACCAGCG 585 Query 300 AGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGT-TTCCTTGCCC 358 ||||||| ||| || || ||||||| |||||| ||||||||||| || || | |||| Sbjct 586 AGCCTTCGCGCAGGGCGACCCGGGTCAGGCCACCAGGCACCAGGCGCGTCTTGC--GCCC 643 Query 359 -GAGAGCACGAAGGGTCGCAAGTCG 382 || ||||||||||| |||| |||| Sbjct 644 GGACAGCACGAAGGGCCGCAGGTCG 668 >seq496634 Length=334 Score = 125 bits (138), Expect = 2e-26 Identities = 90/104 (87%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 238 TCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAG 297 |||| |||||| |||||||||||||||||| || ||||| ||||||||||| || ||||| Sbjct 301 TCAGGCCTCCATCACCCAGGTGTCCTTGGTCCCGCCGCCCTGCGACGAGTTCACCACCAG 242 Query 298 CGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCA 341 ||||||||| || || |||||||||| |||||||||||||| Sbjct 241 CGAGCCTTCGCGCAATGCGACGCGGGTCAGGCCACCGGGCACCA 198 >seq187618 Length=258 Score = 116 bits (128), Expect = 8e-24 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 173 GTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAG 232 ||| ||||||||||||||||| || ||||||| |||||| | || || | | ||| Sbjct 251 GTTTTCGGCGCGCTCCAGGTAGCGGCACATCCAGAACAGATTATCGGCGGTACGGCTCAG 192 Query 233 CATACTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACG 292 ||| | | |||||| |||||||||||||||||||| || || || |||||| Sbjct 191 CATGATGCGTCCTCCAGTACCCAGGTGTCCTTGGTTCCGCCACCCTGGCTGCTGTTGACC 132 Query 293 ACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCC 352 |||||||| ||||| ||||||||||||| || || || || || ||| | ||| Sbjct 131 ACCAGCGATCCTTCGCGCAGCGCCACGCGGCACAGCCCGCCAGGGACGGAACGGATGTCC 72 Query 353 TTGCCCGAGAGCACGAAGGGTCGCAAGTC 381 ||||| | || || | || |||| ||| Sbjct 71 TTGCCACACAGTACATATGGGCGCAGGTC 43 >seq81148 Length=434 Score = 109 bits (120), Expect = 1e-21 Identities = 138/187 (74%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 156 TCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGATC- 214 |||| || || ||| ||||||||||||||| | || ||| |||||| |||| | Sbjct 288 TCCATCAGCCGGGCCGTGTTCTCGGCGCGCTCGATATAGCGCTGCATCCAGAACAGCCCG 229 Query 215 --TGCAGCTGTTCT---ACGCAGCATACTCAGCCCTCCACCACCCAGGTGTCCTTGGTTC 269 ||||| || | || |||| |||| |||||| ||||| ||||||||||| | Sbjct 228 TTTGCAGTACGTCCCAAAAGCGGCATG-TCAGTCCTCCAGAACCCATGTGTCCTTGGTGC 170 Query 270 CACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGC 329 | ||||| || ||| ||||||||||| ||||||||||||| ||||||||||| | | Sbjct 169 CGCCGCCCTGGCTCGAATTGACGACCAGAGAGCCTTCCTTCAAGGCCACGCGGGTGAGCC 110 Query 330 CACCGGG 336 | ||||| Sbjct 109 CGCCGGG 103 >seq77826 Length=1655 Score = 107 bits (118), Expect = 4e-21 Identities = 129/174 (74%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 164 GCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGT 223 ||| || | ||| ||||||||||| | || || ||||||| || || | || || Sbjct 552 GCGCGCGATGTTTTCGGCGCGCTCGATATAGCGGAACATCCAGTAGAGCCCGTTTGCAGT 493 Query 224 TCTACGCAGCATA-CTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGA 282 ||| | || ||| ||||| |||||| ||||||||||| ||||| || || ||||| Sbjct 492 TCTTCCCAACATGGCTCAGTCCTCCAGTACCCAGGTGTCTTTGGTGCCGCCACCTTGGCT 433 Query 283 CGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGG 336 || |||||||| ||||| || | ||| || |||||||||||||| || || || Sbjct 432 GGAATTGACGACGAGCGAACCCTGCTTGAGGGCCACGCGGGTCAAACCGCCTGG 379 >seq309437 Length=282 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 224 TCTACGCAGCATA-CTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGA 282 ||| | |||||| ||||| |||||| ||||| ||||||||||| || || || || Sbjct 282 TCTTCCCAGCATGGCTCAGTCCTCCAGTACCCACGTGTCCTTGGTGCCGCCACCCTGGCT 223 Query 283 CGAGTTGACGACCAGCGAGCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGG 336 ||| ||||||||||| ||||| | |||||| ||||||||||||| || ||||| Sbjct 222 CGAATTGACGACCAGAGAGCCCTGCTTCAGGGCCACGCGGGTCAGACCGCCGGG 169 >seq2955 Length=216 Score = 84.2 bits (92), Expect = 5e-14 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 153 ACTTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGA 212 |||||||||| ||| || ||||||||| ||||||| || || | ||||| |||| Sbjct 75 ACTTCCAGCAGGCGGGCGGTGTTCTCGGCCCGCTCCATATAGCGGGCGATCCAGAACAGG 134 Query 213 TCTGCAGCTGTTCTACGCAGCATACTCAGCCCTCCACCA---CCCAGGTGTCCTTGGTTC 269 | || || || | | |||||| ||| | |||| ||| |||||||||||||| | Sbjct 135 TTGGCGGCGGTGCGGCTCAGCATG-TCATCACTCCGCCAGAACCCAGGTGTCCTTGACCC 193 Query 270 CACCGCCTTGCGACGAGTTGAC 291 | ||||| ||||||||||| || Sbjct 194 CGCCGCCCTGCGACGAGTTCAC 215 >seq199447 Length=2507 Score = 80.6 bits (88), Expect = 6e-13 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 250 CACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTCCTT 309 |||||| |||||||| | || ||||| || || ||||||||||| ||| ||| |||| Sbjct 965 CACCCACGTGTCCTTCGAGCCGCCGCCCTGGGAGGAGTTGACGACGAGCTGGCCCTCCTG 906 Query 310 CAGCGCCACGCGGGTCAAGCCACCGGGCACCA 341 |||||||||||||||| || || |||| || Sbjct 905 GAGCGCCACGCGGGTCAGACCGCCCGGCAGCA 874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1114112977600