Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01002172.1
Length=233
Score E
Sequences producing significant alignments: (Bits) Value
seq394282 143 3e-32
seq425191 141 1e-31
seq43026 138 1e-30
seq46567 129 8e-28
seq106958 114 2e-23
>seq394282
Length=664
Score = 143 bits (158), Expect = 3e-32
Identities = 105/122 (86%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 103 ATGAGCGATATCCCTGCCGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAA 162
|||||| | || || ||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 129 ATGAGCCAGATTCCCGCCGACCTGCGTTATGCCGCCAGCCACGAATGGGCCCGTCTGGAA 70
Query 163 GCTGACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTG 222
|| ||||| | ||||||||| || || |||||||||||||||||||| |||| ||||||
Sbjct 69 GCCGACGGTAGCGTGACCGTCGGCATTTCCGACCATGCCCAGGAAGCCCTGGGCGATGTG 10
Query 223 GT 224
||
Sbjct 9 GT 8
>seq425191
Length=5342
Score = 141 bits (156), Expect = 1e-31
Identities = 110/131 (84%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 103 ATGAGCGATATCCCTGCCGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAA 162
|||||| |||||| ||||| ||||||| ||| || ||||||||||| || ||||||
Sbjct 1011 ATGAGCTCTATCCCCGCCGATCTGCGTTACGCCACCAGCCACGAATGGGCACGCCTGGAA 952
Query 163 GCTGACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTG 222
|| ||||||| |||||||||||| |||||||||||||| ||||||||| |||| ||||||
Sbjct 951 GCCGACGGCAGCGTGACCGTGGGCATCTCCGACCATGCACAGGAAGCGCTGGGTGATGTG 892
Query 223 GTGATTGTCGA 233
||| | ||||
Sbjct 891 GTGTTCATCGA 881
>seq43026
Length=1069
Score = 138 bits (152), Expect = 1e-30
Identities = 109/131 (83%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 103 ATGAGCGATATCCCTGCCGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAA 162
|||||| |||||| ||||| ||||||| ||| || |||||||||||||| ||||||
Sbjct 763 ATGAGCTCTATCCCCGCCGATCTGCGTTACGCCACCAGCCACGAATGGGCCCGCCTGGAA 822
Query 163 GCTGACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTG 222
|| ||||||| |||||||||||| |||||||| ||||| |||||||| |||| ||||||
Sbjct 823 GCCGACGGCAGCGTGACCGTGGGCATCTCCGATCATGCTCAGGAAGCACTGGGTGATGTG 882
Query 223 GTGATTGTCGA 233
||| | ||||
Sbjct 883 GTGTTCATCGA 893
>seq46567
Length=1285
Score = 129 bits (142), Expect = 8e-28
Identities = 107/131 (82%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 103 ATGAGCGATATCCCTGCCGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAA 162
|||||| |||||| ||||| ||||||| ||| || ||||||||||| || ||||||
Sbjct 766 ATGAGCTCTATCCCCGCCGATCTGCGTTACGCCACCAGCCACGAATGGGCACGCCTGGAA 825
Query 163 GCTGACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTG 222
|| ||||||| |||||||||||| ||||| || ||||| ||||| ||| |||| ||||||
Sbjct 826 GCCGACGGCAGCGTGACCGTGGGCATCTCTGATCATGCTCAGGAGGCGCTGGGTGATGTG 885
Query 223 GTGATTGTCGA 233
||| | ||||
Sbjct 886 GTGTTCATCGA 896
>seq106958
Length=485
Score = 114 bits (126), Expect = 2e-23
Identities = 99/123 (80%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 111 TATCCCTGCCGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGG 170
|||||| ||||| ||||||| ||| || ||||||||||| || |||||||| || ||
Sbjct 485 TATCCCCGCCGATCTGCGTTACGCCACCAGCCACGAATGGGCACGCCTGGAAGCCGATGG 426
Query 171 CACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGT 230
|| |||||||||||| |||||||| ||||| ||||| || |||| || |||||| | |
Sbjct 425 CAGCGTGACCGTGGGCATCTCCGATCATGCTCAGGAGGCACTGGGTGACGTGGTGTTCAT 366
Query 231 CGA 233
|||
Sbjct 365 CGA 363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 643108523726
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |