Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01002172.1 Length=233 Score E Sequences producing significant alignments: (Bits) Value seq394282 143 3e-32 seq425191 141 1e-31 seq43026 138 1e-30 seq46567 129 8e-28 seq106958 114 2e-23 >seq394282 Length=664 Score = 143 bits (158), Expect = 3e-32 Identities = 105/122 (86%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 103 ATGAGCGATATCCCTGCCGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAA 162 |||||| | || || ||||||||||||| ||||| || ||||||||||||||||||||| Sbjct 129 ATGAGCCAGATTCCCGCCGACCTGCGTTATGCCGCCAGCCACGAATGGGCCCGTCTGGAA 70 Query 163 GCTGACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTG 222 || ||||| | ||||||||| || || |||||||||||||||||||| |||| |||||| Sbjct 69 GCCGACGGTAGCGTGACCGTCGGCATTTCCGACCATGCCCAGGAAGCCCTGGGCGATGTG 10 Query 223 GT 224 || Sbjct 9 GT 8 >seq425191 Length=5342 Score = 141 bits (156), Expect = 1e-31 Identities = 110/131 (84%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 103 ATGAGCGATATCCCTGCCGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAA 162 |||||| |||||| ||||| ||||||| ||| || ||||||||||| || |||||| Sbjct 1011 ATGAGCTCTATCCCCGCCGATCTGCGTTACGCCACCAGCCACGAATGGGCACGCCTGGAA 952 Query 163 GCTGACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTG 222 || ||||||| |||||||||||| |||||||||||||| ||||||||| |||| |||||| Sbjct 951 GCCGACGGCAGCGTGACCGTGGGCATCTCCGACCATGCACAGGAAGCGCTGGGTGATGTG 892 Query 223 GTGATTGTCGA 233 ||| | |||| Sbjct 891 GTGTTCATCGA 881 >seq43026 Length=1069 Score = 138 bits (152), Expect = 1e-30 Identities = 109/131 (83%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 103 ATGAGCGATATCCCTGCCGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAA 162 |||||| |||||| ||||| ||||||| ||| || |||||||||||||| |||||| Sbjct 763 ATGAGCTCTATCCCCGCCGATCTGCGTTACGCCACCAGCCACGAATGGGCCCGCCTGGAA 822 Query 163 GCTGACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTG 222 || ||||||| |||||||||||| |||||||| ||||| |||||||| |||| |||||| Sbjct 823 GCCGACGGCAGCGTGACCGTGGGCATCTCCGATCATGCTCAGGAAGCACTGGGTGATGTG 882 Query 223 GTGATTGTCGA 233 ||| | |||| Sbjct 883 GTGTTCATCGA 893 >seq46567 Length=1285 Score = 129 bits (142), Expect = 8e-28 Identities = 107/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 103 ATGAGCGATATCCCTGCCGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAA 162 |||||| |||||| ||||| ||||||| ||| || ||||||||||| || |||||| Sbjct 766 ATGAGCTCTATCCCCGCCGATCTGCGTTACGCCACCAGCCACGAATGGGCACGCCTGGAA 825 Query 163 GCTGACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTG 222 || ||||||| |||||||||||| ||||| || ||||| ||||| ||| |||| |||||| Sbjct 826 GCCGACGGCAGCGTGACCGTGGGCATCTCTGATCATGCTCAGGAGGCGCTGGGTGATGTG 885 Query 223 GTGATTGTCGA 233 ||| | |||| Sbjct 886 GTGTTCATCGA 896 >seq106958 Length=485 Score = 114 bits (126), Expect = 2e-23 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 111 TATCCCTGCCGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGG 170 |||||| ||||| ||||||| ||| || ||||||||||| || |||||||| || || Sbjct 485 TATCCCCGCCGATCTGCGTTACGCCACCAGCCACGAATGGGCACGCCTGGAAGCCGATGG 426 Query 171 CACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGT 230 || |||||||||||| |||||||| ||||| ||||| || |||| || |||||| | | Sbjct 425 CAGCGTGACCGTGGGCATCTCCGATCATGCTCAGGAGGCACTGGGTGACGTGGTGTTCAT 366 Query 231 CGA 233 ||| Sbjct 365 CGA 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 643108523726