Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455 .1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters Query= AAMG01002205.1 Length=300 Score E Sequences producing significant alignments: (Bits) Value seq391559 183 5e-44 seq185358 134 2e-29 seq405230 98.7 2e-18 seq40126 80.6 5e-13 >seq391559 Length=1416 Score = 183 bits (202), Expect = 5e-44 Identities = 174/221 (79%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 25 TCGATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGAAGGTCCATGTGCACGTCGGCA 84 ||||||||||| |||||||| || |||||||| |||||| |||||||||||| |||||| Sbjct 746 TCGATCACGTCGTGCAGCATGGCCGCCATCAGACTCTGATGGTCCATGTGCATGTCGGCG 805 Query 85 AGAATATTCGGCCACCGCAAGAGGATGGGTGACATACGCCTCGCCACTACGTCGGCGTTG 144 || || || ||| || || || |||||||||||||| | |||||| || || ||||| || Sbjct 806 AGGATGTT-GGCGACGGCCAGCGGATGGGTGACATAGGGCTCGCCGCTGCGGCGGCGCTG 864 Query 145 GCCGTCGTGGGCTTGTTCGGCGTAGAAATACGCTCGGCGAACCAGGTTGACCTGGTCTGC 204 |||||||| || || ||||||||| | || || || || ||||| ||||||||||| | Sbjct 865 CCCGTCGTGAGCCTGCTCGGCGTAGTAGTAGGCCCGCCGGACCAGATTGACCTGGTCGGG 924 Query 205 GCCGAGGTAGGCCGATAAGCGATCGGCGAGGGCGTCTATGC 245 | |||||| ||| | || ||||| || ||| |||| Sbjct 925 GGTCAGGTAGTCCGCCAGACGCTCGGCCAGCAGGTCGATGC 965 >seq185358 Length=390 Score = 134 bits (148), Expect = 2e-29 Identities = 126/158 (80%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 67 TCCATGTGCACGTCGGCAAGAATATTCGGCCACCGCAAGAGGATGGGTGACATACGCCTC 126 |||||||||| |||||| || || | |||||| || || || ||||| || || || || Sbjct 1 TCCATGTGCATGTCGGCGAGGATGCT-GGCCACGGCCAGCGGGTGGGTCACGTAGGCTTC 59 Query 127 GCCACTACGTCGGCGTTGGCCGTCGTGGGCTTGTTCGGCGTAGAAATACGCTCGGCGAAC 186 || || || |||||||| |||||||| || |||||||||||||| || || || ||||| Sbjct 60 ACCGCTGCGGCGGCGTTGCCCGTCGTGCGCCTGTTCGGCGTAGAAGTAGGCGCGACGAAC 119 Query 187 CAGGTTGACCTGGTCTGCGCCGAGGTAGGCCGATAAGC 224 ||||||||||| || |||| |||||| |||| |||| Sbjct 120 GAGGTTGACCTGTTCGTCGCCCAGGTAGCCCGA-AAGC 156 >seq405230 Length=205 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 24 TTCGATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGAAGGTCCATGTGCACGTCGGC 83 ||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| Sbjct 76 TTCGATCACGTCATGCAGCATGGCGGCCATCAGGCTCTGATGGTCCATGTGCATGTCGGC 17 Query 84 AAGAATATTCGGCCAC 99 || || | |||||| Sbjct 16 GAGGATGCT-GGCCAC 2 >seq40126 Length=11983 Score = 80.6 bits (88), Expect = 5e-13 Identities = 84/109 (77%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 24 TTCGATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGAAGGTCCATGTGCACGTCGGC 83 |||||| ||||||||||||| ||||||||| ||| ||| | |||| | | || || || Sbjct 911 TTCGATGACGTCATGCAGCAGCGCGGCCATGAGGGTCTCATGGTCGAGCTTCATTTCCGC 852 Query 84 AAGAATATTCGGCCACCGCAAGAGGATGGGTGACATACGCCTCGCCACT 132 |||||| |||||| |||| |||||||||| ||| | ||| || || Sbjct 851 CAGAATA-CAGGCCACGGCAACCGGATGGGTGATATAAGGCTCACCGCT 804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853092222848