Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eleusine_20coracana_20subsp._20coracana_20[genbank_20GCA_5F002180455
.1_202017-06-08] 525,627 sequences; 1,195,986,209 total letters
Query= AAMG01002205.1
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
seq391559 183 5e-44
seq185358 134 2e-29
seq405230 98.7 2e-18
seq40126 80.6 5e-13
>seq391559
Length=1416
Score = 183 bits (202), Expect = 5e-44
Identities = 174/221 (79%), Gaps = 1/221 (0%)
Strand=Plus/Plus
Query 25 TCGATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGAAGGTCCATGTGCACGTCGGCA 84
||||||||||| |||||||| || |||||||| |||||| |||||||||||| ||||||
Sbjct 746 TCGATCACGTCGTGCAGCATGGCCGCCATCAGACTCTGATGGTCCATGTGCATGTCGGCG 805
Query 85 AGAATATTCGGCCACCGCAAGAGGATGGGTGACATACGCCTCGCCACTACGTCGGCGTTG 144
|| || || ||| || || || |||||||||||||| | |||||| || || ||||| ||
Sbjct 806 AGGATGTT-GGCGACGGCCAGCGGATGGGTGACATAGGGCTCGCCGCTGCGGCGGCGCTG 864
Query 145 GCCGTCGTGGGCTTGTTCGGCGTAGAAATACGCTCGGCGAACCAGGTTGACCTGGTCTGC 204
|||||||| || || ||||||||| | || || || || ||||| ||||||||||| |
Sbjct 865 CCCGTCGTGAGCCTGCTCGGCGTAGTAGTAGGCCCGCCGGACCAGATTGACCTGGTCGGG 924
Query 205 GCCGAGGTAGGCCGATAAGCGATCGGCGAGGGCGTCTATGC 245
| |||||| ||| | || ||||| || ||| ||||
Sbjct 925 GGTCAGGTAGTCCGCCAGACGCTCGGCCAGCAGGTCGATGC 965
>seq185358
Length=390
Score = 134 bits (148), Expect = 2e-29
Identities = 126/158 (80%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 67 TCCATGTGCACGTCGGCAAGAATATTCGGCCACCGCAAGAGGATGGGTGACATACGCCTC 126
|||||||||| |||||| || || | |||||| || || || ||||| || || || ||
Sbjct 1 TCCATGTGCATGTCGGCGAGGATGCT-GGCCACGGCCAGCGGGTGGGTCACGTAGGCTTC 59
Query 127 GCCACTACGTCGGCGTTGGCCGTCGTGGGCTTGTTCGGCGTAGAAATACGCTCGGCGAAC 186
|| || || |||||||| |||||||| || |||||||||||||| || || || |||||
Sbjct 60 ACCGCTGCGGCGGCGTTGCCCGTCGTGCGCCTGTTCGGCGTAGAAGTAGGCGCGACGAAC 119
Query 187 CAGGTTGACCTGGTCTGCGCCGAGGTAGGCCGATAAGC 224
||||||||||| || |||| |||||| |||| ||||
Sbjct 120 GAGGTTGACCTGTTCGTCGCCCAGGTAGCCCGA-AAGC 156
>seq405230
Length=205
Score = 98.7 bits (108), Expect = 2e-18
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 24 TTCGATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGAAGGTCCATGTGCACGTCGGC 83
||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||
Sbjct 76 TTCGATCACGTCATGCAGCATGGCGGCCATCAGGCTCTGATGGTCCATGTGCATGTCGGC 17
Query 84 AAGAATATTCGGCCAC 99
|| || | ||||||
Sbjct 16 GAGGATGCT-GGCCAC 2
>seq40126
Length=11983
Score = 80.6 bits (88), Expect = 5e-13
Identities = 84/109 (77%), Gaps = 1/109 (1%)
Strand=Plus/Minus
Query 24 TTCGATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGAAGGTCCATGTGCACGTCGGC 83
|||||| ||||||||||||| ||||||||| ||| ||| | |||| | | || || ||
Sbjct 911 TTCGATGACGTCATGCAGCAGCGCGGCCATGAGGGTCTCATGGTCGAGCTTCATTTCCGC 852
Query 84 AAGAATATTCGGCCACCGCAAGAGGATGGGTGACATACGCCTCGCCACT 132
|||||| |||||| |||| |||||||||| ||| | ||| || ||
Sbjct 851 CAGAATA-CAGGCCACGGCAACCGGATGGGTGATATAAGGCTCACCGCT 804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853092222848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |