Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1264 102 2e-19 seq2155 98.7 3e-18 seq547 95.1 3e-17 seq855 86.0 2e-14 seq1920 78.8 2e-12 >seq1264 Length=131945 Score = 102 bits (112), Expect = 2e-19 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 48449 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 48508 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106 || ||||||| ||||||||||||| || ||||||| Sbjct 48509 TTCTTCGGAATGACTGGGCGTAAAGGACACGTAGGCGGT 48547 >seq2155 Length=93404 Score = 98.7 bits (108), Expect = 3e-18 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 236 CCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAG 295 |||| ||||||||||| | ||||| || |||||| | ||||||| ||||||| Sbjct 22411 CCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAG 22470 Query 296 CAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | ||||||||||||||||||||||||||| ||| |||||||| Sbjct 22471 CGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 22512 >seq547 Length=196461 Score = 95.1 bits (104), Expect = 3e-17 Identities = 139/191 (73%), Gaps = 7/191 (4%) Strand=Plus/Minus Query 208 GTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACAC 267 ||||||||| | || || | | ||||||||| |||||| ||| | ||||| |||| Sbjct 84558 GTGAAATGCATCGAGATCGGAAAGAACACCAACGGCGAAAGCACACTACTGGGCCGACAC 84499 Query 268 TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 327 |||| | | |||| || |||||||||| |||||||| |||| | |||||| || Sbjct 84498 TGACACCGAGAGACGACAGGTAGGGGAGCAAATGGGATTAGAGACCCAG-TAGTCCTGGC 84440 Query 328 CCTAAACGATATCAACTAGTTGTTGGG-GATTT-ACTTCCTTG--GTAACGTAGCTAACG 383 | |||| |||| ||||| ||||| | || | || || || || | |||||||||| Sbjct 84439 CGTAAATGATAGATACTAGGTGTTGTGCGACTCGAC--CCGTGTAGTTATGTAGCTAACG 84382 Query 384 CGTGAAGTTGA 394 ||| ||||||| Sbjct 84381 CGTTAAGTTGA 84371 Score = 95.1 bits (104), Expect = 3e-17 Identities = 139/191 (73%), Gaps = 7/191 (4%) Strand=Plus/Minus Query 208 GTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACAC 267 ||||||||| | || || | | ||||||||| |||||| ||| | ||||| |||| Sbjct 88473 GTGAAATGCATCGAGATCGGAAAGAACACCAACGGCGAAAGCACACTACTGGGCCGACAC 88414 Query 268 TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 327 |||| | | |||| || |||||||||| |||||||| |||| | |||||| || Sbjct 88413 TGACACCGAGAGACGACAGGTAGGGGAGCAAATGGGATTAGAGACCCAG-TAGTCCTGGC 88355 Query 328 CCTAAACGATATCAACTAGTTGTTGGG-GATTT-ACTTCCTTG--GTAACGTAGCTAACG 383 | |||| |||| ||||| ||||| | || | || || || || | |||||||||| Sbjct 88354 CGTAAATGATAGATACTAGGTGTTGTGCGACTCGAC--CCGTGTAGTTATGTAGCTAACG 88297 Query 384 CGTGAAGTTGA 394 ||| ||||||| Sbjct 88296 CGTTAAGTTGA 88286 >seq855 Length=162091 Score = 86.0 bits (94), Expect = 2e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 281 CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||||| Sbjct 141405 CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 141349 >seq1920 Length=101656 Score = 78.8 bits (86), Expect = 2e-12 Identities = 119/165 (72%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 231 GAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTG 290 ||||||||| ||||| ||| | ||||| |||||||| || | || |||| | Sbjct 61438 GAACACCAACAGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAG--ACTAAAGTTAG 61381 Query 291 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGT 350 ||||||||| |||||||| |||| |||||| ||| |||||||| ||||| ||| Sbjct 61380 GGGAGCAAATGGGATTAGAGACCCCACTAGTCCTAGCCGTAAACGATGGATACTAGGTGT 61321 Query 351 TGGG-GATTTACTTCCTTG--GTAACGTAGCTAACGCGTGAAGTT 392 || | || | | || || || | ||||||||||||| ||||| Sbjct 61320 TGTGCGACTCAAC-CCATGAAGTGATGTAGCTAACGCGTTAAGTT 61277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289420964832