Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1528 150 2e-34 seq677 105 9e-21 seq6392 84.2 3e-14 seq2429 78.8 1e-12 seq1407 78.8 1e-12 >seq1528 Length=117507 Score = 150 bits (166), Expect = 2e-34 Identities = 182/244 (75%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 41438 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 41496 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 41497 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 41554 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 41555 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 41605 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | ||| |||| |||||| |||||| || ||||||||||||||| Sbjct 41606 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 41665 Query 245 GGTA 248 |||| Sbjct 41666 GGTA 41669 Score = 150 bits (166), Expect = 2e-34 Identities = 182/244 (75%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 44313 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 44371 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 44372 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 44429 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 44430 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 44480 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | ||| |||| |||||| |||||| || ||||||||||||||| Sbjct 44481 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 44540 Query 245 GGTA 248 |||| Sbjct 44541 GGTA 44544 >seq677 Length=179819 Score = 105 bits (116), Expect = 9e-21 Identities = 91/109 (83%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||| ||| ||||||| | |||| | Sbjct 134874 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGTCGAGTTCCTTA--GAGAGTTGGCT 134817 Query 201 CGAACGCCTTA-GTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||||| ||||||||||||| |||||| |||||||||| |||| Sbjct 134816 CGCGC-CCTTAGGTATTCTCTACCTACCCACCTTTGTCGGTTTAGGGTA 134769 >seq6392 Length=19582 Score = 84.2 bits (92), Expect = 3e-14 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||| ||||||||||||||| ||| ||||||||||| |||||| || |||| | | Sbjct 16194 GCACCCGTTCTCCCGAAGTTACAGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 16253 Query 202 GA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || |||| ||| | ||||| || ||||||||| ||||| |||| Sbjct 16254 GATGCGCCCTAGAGTACTCTAATTGTTCACCTGTGTTGGTTTGGGGTA 16301 >seq2429 Length=84763 Score = 78.8 bits (86), Expect = 1e-12 Identities = 87/110 (79%), Gaps = 6/110 (5%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACG-GGGCC-ATTTTGCCGAATTCCTTAACCACAGTTCAC 199 ||||||||||||| ||||||| | ||||| |||||| ||| ||||||| | |||| | Sbjct 59594 GCACCCCTTCTCCTGAAGTTATGTGGGCCTATTTTGTCGAGTTCCTTAG--AGAGTTATC 59537 Query 200 CCGAACGCCTTAG-TATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | |||||| |||||||||||| |||||| | ||||||| |||| Sbjct 59536 TCGTGC-CCTTAGGTATTCTCTACCTACCCACCTTTATCGGTTTCGGGTA 59488 >seq1407 Length=123649 Score = 78.8 bits (86), Expect = 1e-12 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| ||||||||||| |||||| || |||| | | Sbjct 49373 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 49432 Query 202 GA-ACGCCTTAGTAT 215 || |||| |||||| Sbjct 49433 GACGCGCCCTAGTAT 49447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694306609059