Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1528 237 4e-60 seq1022 91.5 4e-16 >seq1528 Length=117507 Score = 237 bits (262), Expect = 4e-60 Identities = 300/413 (73%), Gaps = 22/413 (5%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 44127 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 44186 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 44187 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 44246 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||| ||| | || Sbjct 44247 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC------TTATCACAC 44300 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 44301 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 44360 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 44361 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 44420 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 44421 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 44465 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTC-AAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | |||||||| | ||||| | |||| |||||| Sbjct 44466 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTAC 44518 Score = 215 bits (238), Expect = 1e-53 Identities = 280/388 (72%), Gaps = 22/388 (6%) Strand=Plus/Plus Query 32 AATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCG 91 |||||||| | ||| | |||||||||| || ||||||| |||||||||||||||| Sbjct 41277 AATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCG 41336 Query 92 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTA 151 ||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||| Sbjct 41337 CTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTA 41396 Query 152 CCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCG 211 |||||||||| || | ||| ||| | || | | ||||||| |||||| Sbjct 41397 CCGGGGCTTCCATTCAAAGC------TTATCACACTTCTCCTTCCGACCTTCCAGCACCG 41450 Query 212 GGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAA 271 |||||| |||| || |||||| || || | || ||||||| ||||||||||||||| Sbjct 41451 GGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAA 41510 Query 272 ACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCC 331 |||||||| | |||||||| | | | | | | | | || || |||| Sbjct 41511 ACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAA---AGATAGGAGAGCACC- 41566 Query 332 TCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGT 391 ||||||||||||||||||| | | ||||||| ||||||||| | || Sbjct 41567 -----------CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGT 41615 Query 392 TCTCTC-AAGCGCCTTGGTATTCTCTAC 418 |||||| | ||||| | |||| |||||| Sbjct 41616 TCTCTCGACGCGCCCTAGTATACTCTAC 41643 >seq1022 Length=148759 Score = 91.5 bits (100), Expect = 4e-16 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 70 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 129 |||||||| ||||||| |||| ||||||||| || |||||||||||||||||||||| || Sbjct 57343 GTTACGCCTTTCGTGCGGGTCAGAACTTACC-GATAAGGAATTTCGCTACCTTAGGAACG 57401 Query 130 TTATTGTTACGGCCG 144 ||| |||||| ||| Sbjct 57402 CTATAGTTACGACCG 57416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260624963136