Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1528 268 2e-69 seq1022 116 8e-24 seq677 80.6 6e-13 seq1407 78.8 2e-12 >seq1528 Length=117507 Score = 268 bits (296), Expect = 2e-69 Identities = 285/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 44127 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 44186 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 44187 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 44246 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | | || Sbjct 44247 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATCAC 44298 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 44299 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 44358 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 44359 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 44418 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 44419 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 44478 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 44479 CTTCGACATGGTTCTC 44494 Score = 250 bits (276), Expect = 5e-64 Identities = 266/351 (76%), Gaps = 20/351 (6%) Strand=Plus/Plus Query 26 AATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCG 85 |||||||||| ||| || ||||||| | | ||||||| || ||||||| ||||| Sbjct 41277 AATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCG 41336 Query 86 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTA 145 ||||| ||||||||||||||||||||||||||| |||| |||||| ||||||||||| Sbjct 41337 CTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTA 41396 Query 146 CTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTT--AACCTTCCAGCAC 203 | ||||||| |||| ||| | | ||| || |||| |||||||||||| Sbjct 41397 CCGGGGCTTCCATTCAAAGCT--------TATCACACTTCTCCTTCCGACCTTCCAGCAC 41448 Query 204 CGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGT 263 |||||||| ||||| ||||||||||| || | |||||||||| ||||||||||| | Sbjct 41449 CGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAAT 41508 Query 264 AAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC------ATAGACAG----GCACCCC 313 ||||||||||| ||| | | ||| || | | | ||| || ||||||| Sbjct 41509 AAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCC 41568 Query 314 TTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||||||| |||||||||||||||||||||||||||||| || |||||| Sbjct 41569 TTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTC 41619 >seq1022 Length=148759 Score = 116 bits (128), Expect = 8e-24 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 49 GACAGTGCCCAAATCG-TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTT 107 ||||||| ||| |||| |||||||||||||||||||| ||||||||| || ||||||||| Sbjct 57327 GACAGTGTCCAGATCGGTTACGCCTTTCGTGCGGGTCAGAACTTACC-GATAAGGAATTT 57385 Query 108 CGCTACCTTAGGACCGTTATAGTTACGGCCG 138 ||||||||||||| || |||||||||| ||| Sbjct 57386 CGCTACCTTAGGAACGCTATAGTTACGACCG 57416 >seq677 Length=179819 Score = 80.6 bits (88), Expect = 6e-13 Identities = 76/99 (77%), Gaps = 11/99 (11%) Strand=Plus/Minus Query 254 TGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGGCACCCC 313 ||||| || ||||||||||| |||||| || ||||| || |||||||| Sbjct 134915 TGTTTCTGTTAAACAGTCGCCCGGGCCTGGTCACTGCGACC-----------GGCACCCC 134867 Query 314 TTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||||| ||||||||||| |||||| ||||||||||| Sbjct 134866 TTCTCCCGAAGTTACGGGGCTATTTTGTCGAGTTCCTTA 134828 >seq1407 Length=123649 Score = 78.8 bits (86), Expect = 2e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||| |||||||||||||||||||||||||||||| || |||||| Sbjct 49373 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTC 49430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062252507008