Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq855 167 7e-39 seq1336 147 7e-33 seq4178 118 3e-24 seq2412 114 4e-23 seq432 105 2e-20 seq1313 95.1 4e-17 seq6266 91.5 4e-16 seq267 91.5 4e-16 seq2244 82.4 2e-13 seq525 77.0 1e-11 >seq855 Length=162091 Score = 167 bits (184), Expect = 7e-39 Identities = 178/234 (76%), Gaps = 17/234 (7%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 141281 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 141222 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| Sbjct 141221 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 141171 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 | | | | | ||| ||| || || || | ||||||| ||||||| || Sbjct 141170 -ACAACAAAACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 141112 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 141111 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 141058 >seq1336 Length=127428 Score = 147 bits (162), Expect = 7e-33 Identities = 117/141 (83%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 24142 TACGTTCGCAAGAATGAAACTCAAAGGAATTCACGGGGGCCCGCACAAGCGGTGGAGCAT 24201 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | | |||| Sbjct 24202 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCCAATCCTC 24261 Query 121 TAGAGATAGAGGTTTCCCCTT 141 | || | ||||| | ||||| Sbjct 24262 TTGAAAGAGAGGGGTGCCCTT 24282 >seq4178 Length=46423 Score = 118 bits (130), Expect = 3e-24 Identities = 91/107 (85%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 || || |||||| |||||||||||||||||||||||| |||| | |||||||| ||||| Sbjct 4112 TATGATCGCAAGAATGAAACTCAAAGGAATTGACGGGG-CCCGGATAAGCGGTGAAGCAT 4170 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||| || ||| || |||| |||||||||||||||| |||||||| Sbjct 4171 GTGGCTTGATTTGATGCAAAGCGAAGAACCTTACCAGGACTTGACAT 4217 Score = 93.3 bits (102), Expect = 1e-16 Identities = 102/134 (76%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244 || ||| || |||||||||||||| | |||||||||||| ||| | ||||||| || | Sbjct 4217 TGCCGTAAGGTGTTGGGTTAAGTCTCCCAACGAGCGCAAACCTCGCGTTTAGTTGTCA-C 4275 Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304 | |||| | || |||| | ||||||||||| || || |||||| | |||||| | Sbjct 4276 TATGAGTTTGAAACCCTAAATAGACTGCCGGTGTTAAGCC---GGAAGGAGAGGACGAGG 4332 Query 305 TCAAATCATCATGC 318 ||| ||||||||| Sbjct 4333 CCAAGTCATCATGC 4346 >seq2412 Length=85372 Score = 114 bits (126), Expect = 4e-23 Identities = 74/80 (93%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 9 CAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTA 68 |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 32705 CAAGAATGAAACTCAAAGGAATTGACAGG-ACCCGCACAAGCGGTGGAGCATGTGGTTTA 32647 Query 69 ATTCGAAGCAACGCGAAGAA 88 |||||| |||| |||||||| Sbjct 32646 ATTCGATGCAAAGCGAAGAA 32627 >seq432 Length=214083 Score = 105 bits (116), Expect = 2e-20 Identities = 88/105 (84%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 81655 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 81714 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGC 370 ||||| |||||||||||||||||| |||| |||| ||| ||| Sbjct 81715 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGC 81758 >seq1313 Length=129030 Score = 95.1 bits (104), Expect = 4e-17 Identities = 115/153 (75%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||| || || | |||||| || | || |||||||| Sbjct 68907 GACTGCCAGTGAGATACTGGAGGAAGGCGGAGATGTCGTCAAGTCCGCCTGACCCTTATG 68848 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385 ||||| |||||||||||||||||| |||| |||| ||| ||| | | | ||| Sbjct 68847 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 68789 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 ||| ||| || |||| | |||||||||||| Sbjct 68788 AGCGAAT-CCGGAAAGATTGCCTCAGTTCGGAT 68757 >seq6266 Length=20622 Score = 91.5 bits (100), Expect = 4e-16 Identities = 82/102 (80%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| ||||| |||||| ||||||||||| || | ||||| || ||| |||||||| Sbjct 4901 CGCAAGAATGAAATTCAAAGTAATTGACGGGGGCCA-CTCAAGCTGTAGAGGATGTGGTT 4843 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC 108 |||||||| |||| ||| |||||||| | ||||||||| Sbjct 4842 TAATTCGATGCAAAATGAAAAACCTTACTAGGGCTTGACATC 4801 Score = 78.8 bits (86), Expect = 3e-12 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| || ||| ||||| |||||| ||||| |||| | | ||||| || ||| | Sbjct 6366 TACGTTCGGAAGAATGAAATTCAAAGTAATTGGGGGGGGGGCACTCAAGCTGTAGAGGAC 6307 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC 108 |||||||||||||| |||| | ||| |||||||| | ||||||||| Sbjct 6306 GTGGTTTAATTCGATGCAAAGTGAAAAACCTTACTAGGGCTTGACATC 6259 Score = 78.8 bits (86), Expect = 3e-12 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| || ||| ||||| |||||| ||||| |||| | | ||||| || ||| | Sbjct 7407 TACGTTCGGAAGAATGAAATTCAAAGTAATTGGGGGGGGGGCACTCAAGCTGTAGAGGAC 7348 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC 108 |||||||||||||| |||| | ||| |||||||| | ||||||||| Sbjct 7347 GTGGTTTAATTCGATGCAAAGTGAAAAACCTTACTAGGGCTTGACATC 7300 >seq267 Length=256523 Score = 91.5 bits (100), Expect = 4e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 14 TTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG 73 |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 256456 TTGATCCTCAAAGGAATTGACGGGGGTCTGCACAAGCGGTGGAGCATGTGGTTTAATTCG 256515 Query 74 AAGCAACG 81 | ||||| Sbjct 256516 ATACAACG 256523 >seq2244 Length=90866 Score = 82.4 bits (90), Expect = 2e-13 Identities = 71/83 (86%), Gaps = 4/83 (5%) Strand=Plus/Minus Query 15 TGAAACTCAAAGGAA-TTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG 73 ||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 36780 TGAAACTCAAAGGAAATTGAGAAAG-CCCGCACAAGCGGTGGAGCATGTGGTTTAATTCA 36722 Query 74 AAGC-AACGCGAAG-AACCTTAC 94 | || || || ||| |||||||| Sbjct 36721 ATGCAAAAGCAAAGAAACCTTAC 36699 >seq525 Length=200191 Score = 77.0 bits (84), Expect = 1e-11 Identities = 47/49 (96%), Gaps = 1/49 (2%) Strand=Plus/Minus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTG 63 |||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 138421 TGAAACTCAAAGGAATTGACTGGG-CCCGCACAAGCGGTGGAGCATGTG 138374 Score = 75.2 bits (82), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 1/51 (2%) Strand=Plus/Minus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGT 65 |||||||||||||||||||| || ||| ||||||||||||||||||||||| Sbjct 136271 TGAAACTCAAAGGAATTGACTGG-ACCTGCACAAGCGGTGGAGCATGTGGT 136222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503791199680