Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1921 336 4e-90 seq1483 176 8e-42 seq2165 73.4 7e-11 >seq1921 Length=101655 Score = 336 bits (372), Expect = 4e-90 Identities = 251/293 (86%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | || ||| |||||||||| |||| ||||| ||||||| Sbjct 59244 TACTAGGTTGAATTACTATCGCAGC-ACGATCATCAGTAGCTTAAACCTAACATGTCTCA 59302 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||| |||| ||||||| || ||||||||||||||||| ||| || Sbjct 59303 CGACGGTCTAAACCCAACTCATGTTCCCTGTTGATGGGTGAACAATCCAACTCTTGATGA 59362 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 59363 ATTCTGCTTCACAATGATAGAAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 59422 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||| |||||||| ||||||| || |||||||||||||| |||||||||| | Sbjct 59423 GAACGCTTGGCTACCACAAGCTAGTTATCTCTATGGTAACTTTTCTGACACCTCTAGCTT 59482 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || | | || || |||||||||||||||||||| |||||| |||| |||||| Sbjct 59483 CACACTCGGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 59535 >seq1483 Length=119601 Score = 176 bits (194), Expect = 8e-42 Identities = 140/166 (84%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 11 AATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 |||| | || | ||| ||| ||||||||| |||||||||||||||||||| ||||||||| Sbjct 15614 AATTGCTATCGCGGC-ACGCTCATCAGTAAGGTAAAACTAACCTGTCTCACGACGGTCTA 15672 Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||||||||||||| |||| ||| ||||||||||||||||| ||||| || ||| Sbjct 15673 AACCCAGCTCACGTTCTTTATTGATGGATGAACAATCCAACGCTTGGTGAATTGTG-TTC 15731 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCG 176 |||||| |||||| | ||||| |||||||||||||||||| || Sbjct 15732 ACAATGATAAGAAGAGGCTACATCAAAGGATCAAAAAGCAACGGCG 15777 >seq2165 Length=93261 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || |||| |||| ||||| ||||| Sbjct 83458 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 83517 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | ||| | | | |||||||||||||||| | |||| Sbjct 83518 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 83574 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | |||| ||||||||| ||||||||| Sbjct 83575 CTCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 83629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854281383648