Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq3782 172 1e-40 seq1264 165 2e-38 seq85 77.0 7e-12 seq2843 75.2 2e-11 >seq3782 Length=52826 Score = 172 bits (190), Expect = 1e-40 Identities = 145/178 (81%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 |||||||| |||||||||||||||||||| ||||| |||||||| | |||| |||||| Sbjct 12259 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCACACTGCTGGCCACCGTGGGAGTCC 12318 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 || | |||||||||| |||||||| |||||||||| ||||||| || | ||| | | Sbjct 12319 GGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGG 12378 Query 161 CTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||| |||| |||||| |||||||| ||||| | || ||||||||| | ||||| Sbjct 12379 CTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 12436 >seq1264 Length=131945 Score = 165 bits (182), Expect = 2e-38 Identities = 140/169 (83%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 48414 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 48357 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 48356 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 48297 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTG 167 |||||| |||||||||| ||||||| || | ||| | | ||||||| Sbjct 48296 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTG 48248 >seq85 Length=357496 Score = 77.0 bits (84), Expect = 7e-12 Identities = 74/94 (79%), Gaps = 7/94 (7%) Strand=Plus/Minus Query 86 CTCCCGTAGGAGT---CTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 142 |||| |||||||| |||| ||||||||||| | | |||| ||| |||||||| ||| Sbjct 66304 CTCCAGTAGGAGTAGTCTGGGTCGTGTCTCAGTCCTAATGTGGTTGACCATCCTCTGAGA 66245 Query 143 CCAGTTACGGATCG----TCGCCTTGGTGAGCCA 172 ||||||| ||||| |||||||||| ||||| Sbjct 66244 CCAGTTATTGATCGATCATCGCCTTGGTAAGCCA 66211 >seq2843 Length=73142 Score = 75.2 bits (82), Expect = 2e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155 |||| || || |||||||||| |||||| ||||||||||||||||| || ||| |||| Sbjct 26354 AGTCGGGGCCATGTCTCAGTTGAAGTGTGGTTGATCATCCTCTCAGACTAGCTACTGATC 26413 Query 156 GTCGCCTTGGTGAGCCATTACCTCAC 181 || | ||||| | | ||| | |||| Sbjct 26414 ATCACTTTGGTAATCTATTGCTTCAC 26439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071851174240