Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq3782 120 6e-25 seq1264 116 7e-24 >seq3782 Length=52826 Score = 120 bits (132), Expect = 6e-25 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 4 GTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAG 63 || |||| ||| || |||| |||||||| ||| || || |||||||| | |||| |||| Sbjct 12256 GTTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCACACTGCTGGCCACCGTGGGAG 12315 Query 64 TCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGT 123 || |||| |||||||||||||| |||||| | ||| || || || |||| ||| | Sbjct 12316 TCCGGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCAT 12375 Query 124 CGGCTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||||| || ||| || |||||||||||||| Sbjct 12376 TGGCTTGGTCAGCCTTTACCTGACCAACTACCTAAT 12411 >seq1264 Length=131945 Score = 116 bits (128), Expect = 7e-24 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 48374 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 48315 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 48314 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 48255 Query 127 CTTGGTG 133 ||||||| Sbjct 48254 CTTGGTG 48248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998261392128