Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq155 118 2e-24 seq244 75.2 3e-11 >seq155 Length=302024 Score = 118 bits (130), Expect = 2e-24 Identities = 145/194 (75%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||| ||| ||| |||| || ||| | | | || | || | || || || Sbjct 300941 CCACAGCTTTGGCAGATCGCTTA-GCTCCGTTCAACT-TCAGTGCAAGGGCGCTCGATCA 300998 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||| |||||| | |||| |||||||||| | || || || ||| ||||| Sbjct 300999 GTGAGCTATTACACACTCTATAAAGGGTGGCTGCTTCTAGGCAAATCTTTTGGCTGTCTT 301058 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | |||| | |||| ||||| || || |||||||||||||||| || || ||| Sbjct 301059 TGCACCCCCACCT-CTTTATCACTGCGTGGTCATTTAGGGGCCTTAGCTGGTGGTCGGGG 301117 Query 387 CTGTTTCCCTCTCG 400 ||||||||||||| Sbjct 301118 TTGTTTCCCTCTCG 301131 >seq244 Length=261414 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || ||| ||||| ||||||| | || | ||||||||||||||||||||| |||||||| Sbjct 96364 CTAGACTAGTGATCTATTACACTTTCGTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTG 96305 Query 319 GTTGTC 324 |||||| Sbjct 96304 GTTGTC 96299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177436513792