Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2165 250 4e-64 seq3519 167 4e-39 seq5304 141 1e-31 seq2994 116 6e-24 seq2792 113 7e-23 seq1044 109 9e-22 seq11715 80.6 4e-13 seq1574 77.0 5e-12 >seq2165 Length=93261 Score = 250 bits (276), Expect = 4e-64 Identities = 220/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||||| Sbjct 83288 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 83347 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 83348 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 83407 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 83408 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 83467 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 83468 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 83527 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||||||||||| Sbjct 83528 CCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 83560 >seq3519 Length=57821 Score = 167 bits (184), Expect = 4e-39 Identities = 174/228 (76%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 46045 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 45986 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 45985 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 45926 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 45925 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 45866 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCC 252 || |||| || |||||||| || |||||||||||||| ||||| ||| Sbjct 45865 ACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCC 45818 >seq5304 Length=31054 Score = 141 bits (156), Expect = 1e-31 Identities = 122/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 125 GGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGAC 184 ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||| Sbjct 28403 GGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCATGAC 28344 Query 185 GTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTAC 244 |||||||||||||||| || || | ||||| | ||||||||||||||||||| || | Sbjct 28343 GTTCTGAACCCAGCTCATGTACCGCATTAATAGACGAACAGCCCAACCCTTGGAACTACC 28284 Query 245 TTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | |||| ||||| | || |||||||||||| Sbjct 28283 TACAGCTCCAGGTGGCGAAGAGCCGACATCG 28253 >seq2994 Length=69509 Score = 116 bits (128), Expect = 6e-24 Identities = 85/99 (86%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 177 CTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTG 236 ||| |||||||||||||||||||| ||| || | |||||||||||||||||||||||||| Sbjct 35622 CTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTG 35681 Query 237 GGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||| || |||| ||||| | || |||||||||||| Sbjct 35682 GAACCACCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 35720 Score = 116 bits (128), Expect = 6e-24 Identities = 85/99 (86%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 177 CTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTG 236 ||| |||||||||||||||||||| ||| || | |||||||||||||||||||||||||| Sbjct 36422 CTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTG 36481 Query 237 GGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | ||| || |||| ||||| | || |||||||||||| Sbjct 36482 GAACCACCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 36520 Score = 96.9 bits (106), Expect = 5e-18 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 177 CTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTG 236 ||| |||||||||||||||||||| ||| || | |||||||||||||||||||||||||| Sbjct 33152 CTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTG 33211 Query 237 GGACCTACTTCAGCCCCA 254 | ||| || |||| ||| Sbjct 33212 GAACCACCTACAGCTCCA 33229 >seq2792 Length=74398 Score = 113 bits (124), Expect = 7e-23 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 150 GCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTC 209 |||||| |||||| ||||||||||||||| | || ||||||||||||| | ||| || | Sbjct 56869 GCCCACACCGGATATGGACCGAACTGTCTCACAACATTCTGAACCCAGCCCACGTACCGC 56810 Query 210 TTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||||||||||||||| ||| Sbjct 56809 GTTAATGGGCGAACAGCCCAACCCTTGGAACC 56778 >seq1044 Length=146960 Score = 109 bits (120), Expect = 9e-22 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 106 CCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGG 165 |||||||||||||||||| ||| || ||||||||| || |||||||| |||||| | Sbjct 48618 CCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATG 48677 Query 166 GACCGAACTGTCTCGCGACGTTCTGAACCC 195 |||||||||||||| ||||||||||||||| Sbjct 48678 GACCGAACTGTCTCACGACGTTCTGAACCC 48707 Score = 109 bits (120), Expect = 9e-22 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 106 CCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGG 165 |||||||||||||||||| ||| || ||||||||| || |||||||| |||||| | Sbjct 50991 CCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATG 51050 Query 166 GACCGAACTGTCTCGCGACGTTCTGAACCC 195 |||||||||||||| ||||||||||||||| Sbjct 51051 GACCGAACTGTCTCACGACGTTCTGAACCC 51080 >seq11715 Length=1327 Score = 80.6 bits (88), Expect = 4e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 ||||||||| || |||||||| |||||| ||||||||||||||| ||||||||||| Sbjct 67 TCCTCTCAATGCTCTAACGCCCACAGCGGATATGGACCGAACTGTCTCACGACGTTCTGA 8 Query 192 ACCCAGC 198 ||||||| Sbjct 7 ACCCAGC 1 >seq1574 Length=115612 Score = 77.0 bits (84), Expect = 5e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 173 CTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACC 232 ||||||| ||||||||| |||||| ||| ||| || |||| || |||||||| || |||| Sbjct 108285 CTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAACAACCGAACC 108226 Query 233 CTTGGGA 239 ||||||| Sbjct 108225 CTTGGGA 108219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780694988988