Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1264 154 4e-35 seq3782 132 1e-28 >seq1264 Length=131945 Score = 154 bits (170), Expect = 4e-35 Identities = 135/167 (81%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 48414 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 48355 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 48354 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 48295 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTG 168 |||||||| |||||| |||||||||| | ||| | | || |||| Sbjct 48294 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTG 48248 >seq3782 Length=52826 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 42 GCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101 |||| ||| ||||| |||||||||| ||| ||||| |||||||| | |||| |||||| Sbjct 12259 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCACACTGCTGGCCACCGTGGGAGTCC 12318 Query 102 GGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGC 161 || | |||||||||| |||||||||||| |||||| |||||||||| | ||| | | Sbjct 12319 GGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGG 12378 Query 162 CTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 || ||| ||| ||||| ||||||| ||||| Sbjct 12379 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 12411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222230294208