Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1264 237 5e-60 >seq1264 Length=131945 Score = 237 bits (262), Expect = 5e-60 Identities = 216/269 (80%), Gaps = 5/269 (2%) Strand=Plus/Plus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||| Sbjct 48280 GGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGG 48339 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC- 344 ||||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | Sbjct 48340 GGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCA 48399 Query 345 -TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGC 401 | | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||| Sbjct 48400 ATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGC 48459 Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461 ||||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| Sbjct 48460 CCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAAT 48519 Query 462 TACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 ||| ||||||||||| |||||| ||| Sbjct 48520 GACT-GGGCGTAAAGGACACGTAGGCGGT 48547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497392088192