Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1264 118 3e-24 seq2155 100 7e-19 seq855 96.9 8e-18 seq547 96.9 8e-18 seq1920 93.3 1e-16 >seq1264 Length=131945 Score = 118 bits (130), Expect = 3e-24 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 48445 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 48504 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 || ||| | |||||| |||||||||||||| |||||| ||| Sbjct 48505 AGTGTTCTTCGGAATGACTGGGCGTAAAGGACACGTAGGCGGT 48547 >seq2155 Length=93404 Score = 100 bits (110), Expect = 7e-19 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| |||| Sbjct 22417 GCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACA 22476 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||| |||||||||||||| Sbjct 22477 GGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 22514 >seq855 Length=162091 Score = 96.9 bits (106), Expect = 8e-18 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 267 GACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCC 326 ||| ||| || ||||||| |||||||| ||||||||||||||||||||||||||| ||| Sbjct 141417 GACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCC 141358 Query 327 GTAAACGATGA 337 ||||||||||| Sbjct 141357 GTAAACGATGA 141347 >seq547 Length=196461 Score = 96.9 bits (106), Expect = 8e-18 Identities = 109/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 204 CGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTA 263 ||||||||||| || || | | |||||||| |||||| || |||||| | | Sbjct 90123 CGGTGAAATGCACCGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGAC 90064 Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 ||| |||||||| |||||| |||||||||| ||||||||| |||| |||| || Sbjct 90063 ACTAACACTGAG--ATGAAAGCTAGGGGAGCAAATAGGATTAGAGACCC-AGTAGCCCCA 90007 Query 324 GCCGTAAACGATGAATACTAGGTG 347 ||||||||| ||| |||||||||| Sbjct 90006 GCCGTAAACAATGGATACTAGGTG 89983 Score = 91.5 bits (100), Expect = 4e-16 Identities = 108/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 204 CGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTA 263 ||||||||||| | || || | | |||||||| |||||| || | |||| | | Sbjct 84560 CGGTGAAATGCATCGAGATCGGAAAGAACACCAACGGCGAAAGCACACTACTGGGCCGAC 84501 Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||| ||| ||| || |||||||||| |||||||| |||| ||||||| Sbjct 84500 ACTGACACCGAGAGACGACAGGTAGGGGAGCAAATGGGATTAGAGACCC-AGTAGTCCTG 84442 Query 324 GCCGTAAACGATGAATACTAGGTGT 348 |||||||| ||| ||||||||||| Sbjct 84441 GCCGTAAATGATAGATACTAGGTGT 84417 Score = 91.5 bits (100), Expect = 4e-16 Identities = 108/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 204 CGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTA 263 ||||||||||| | || || | | |||||||| |||||| || | |||| | | Sbjct 88475 CGGTGAAATGCATCGAGATCGGAAAGAACACCAACGGCGAAAGCACACTACTGGGCCGAC 88416 Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||| ||| ||| || |||||||||| |||||||| |||| ||||||| Sbjct 88415 ACTGACACCGAGAGACGACAGGTAGGGGAGCAAATGGGATTAGAGACCC-AGTAGTCCTG 88357 Query 324 GCCGTAAACGATGAATACTAGGTGT 348 |||||||| ||| ||||||||||| Sbjct 88356 GCCGTAAATGATAGATACTAGGTGT 88332 Score = 73.4 bits (80), Expect = 1e-10 Identities = 66/83 (80%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 266 TGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 325 |||||||||| ||||||| ||| |||||| |||||||| |||| |||| | || Sbjct 80406 TGACACTGAGAGACGAAAGCTAGGGTAGCAAATGGGATTAGAGACCCCAATAGTTCTAGC 80347 Query 326 CGTAAACGATGAATACTAGGTGT 348 | ||||||||| ||||||||||| Sbjct 80346 CATAAACGATGGATACTAGGTGT 80324 >seq1920 Length=101656 Score = 93.3 bits (102), Expect = 1e-16 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTG 288 |||||||| ||||| || |||||| | | |||||||||||| || |||| | Sbjct 61438 GAACACCAACAGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGACT--AAAGTTAG 61381 Query 289 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 ||||||||| |||||||| |||| |||||| ||||||||||||| ||||||||||| Sbjct 61380 GGGAGCAAATGGGATTAGAGACCCCACTAGTCCTAGCCGTAAACGATGGATACTAGGTGT 61321 Score = 86.0 bits (94), Expect = 2e-14 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 204 CGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTA 263 ||||||||||| | || ||| | | |||||||| |||||| | |||| | | | Sbjct 57245 CGGTGAAATGCATCGAGATTGGAAAGAACACCAATGGCGACAACACTCTGCTAGGCGGAC 57186 Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 ||| |||||||| ||||||| |||||||| ||||| || |||| | ||| | Sbjct 57185 ACTAACACTGAGAGACGAAAGCTAAAGGAGCAAATGGGATTGGAGACCCCAGCAGT-CTG 57127 Query 324 GCCGTAAACGATGAATACTAGGTG 347 ||||||||||||| |||||||||| Sbjct 57126 GCCGTAAACGATGGATACTAGGTG 57103 Score = 86.0 bits (94), Expect = 2e-14 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 204 CGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTA 263 ||||||||||| | || ||| | | |||||||| |||||| | |||| | | | Sbjct 59483 CGGTGAAATGCATCGAGATTGGAAAGAACACCAATGGCGACAACACTCTGCTAGGCGGAC 59424 Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 ||| |||||||| ||||||| |||||||| ||||| || |||| | ||| | Sbjct 59423 ACTAACACTGAGAGACGAAAGCTAAAGGAGCAAATGGGATTGGAGACCCCAGCAGT-CTG 59365 Query 324 GCCGTAAACGATGAATACTAGGTG 347 ||||||||||||| |||||||||| Sbjct 59364 GCCGTAAACGATGGATACTAGGTG 59341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203032959744