Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1921 286 1e-74 seq4951 223 1e-55 seq319 114 4e-23 seq142 100 9e-19 seq1528 78.8 3e-12 >seq1921 Length=101655 Score = 286 bits (316), Expect = 1e-74 Identities = 197/219 (90%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 318 ATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGG 377 |||||| ||||| ||||| |||||||||||||||||| ||||||||| ||||||| | || Sbjct 59919 ATTCCGTCAAGCTCGTTCTCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAATAGG 59978 Query 378 AATCTCGTTAATCCATTCATGCGC--GTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 ||||||||||||| |||||||| | |||||||||||||||||||||||||| |||||| Sbjct 59979 AATCTCGTTAATCTATTCATGCACACGTCACTAATTAGATGACGAGGCATTTATCTACCT 60038 Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 ||| | ||||||||||||||||||| |||||||||| ||||||||||||||| || |||| Sbjct 60039 TAAAATAGTCATAGTTACTCCCGCCATTTACCCGCGTTTGGTTGAATTTCTTTACCTTGA 60098 Query 496 CATTCAGAGCACTGGGCAG-AAATCACATTGCGTCAACA 533 ||||||||||||| ||||| |||||||||||||||| || Sbjct 60099 CATTCAGAGCACT-GGCAGAAAATCACATTGCGTCAGCA 60136 Score = 255 bits (282), Expect = 2e-65 Identities = 252/322 (78%), Gaps = 29/322 (9%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | |||| ||||| |||||||| Sbjct 59569 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAAGACACATGCGTTATC 59628 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||| || ||||||||||||||| ||| |||||||||||| || || |||| Sbjct 59629 TTTTAACAGATATGTCGCCCCAGCCAAACTTCCCCCCTGACAATGTCTTCCGGCCAGATC 59688 Query 127 GGCCCGCGAAG---GACCTTAACGCCAGAAAATG-GTCGGTGAAGACCAGTTCCGCTTCA 182 ||| | | | |||| |||| ||| || | ||||| || ||||||| Sbjct 59689 AGCCTGGCTTGCCTGGCCTTGGAGCCAAAAAGTGAGGCGGTG----CC----CCGCTTCC 59740 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || | ||||| |||||||||||||||||||||| || ||||| || Sbjct 59741 --GACT---TAAAA-----------GTAGTGGTATTTCACTTGCGCCTGAA-GGCTCTCA 59783 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59784 CTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 59843 Query 303 CTTCTTTCCCCGCTGATTCCGC 324 |||||||||||||||||||||| Sbjct 59844 CTTCTTTCCCCGCTGATTCCGC 59865 >seq4951 Length=35014 Score = 223 bits (246), Expect = 1e-55 Identities = 141/152 (93%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 256 TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6453 TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 6512 Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375 |||||||||||||||||||||||||| |||| ||| | | ||||||||| |||||||||| Sbjct 6513 TGATTCCGCCAAGCCCGTTCCCTTGGTTGTGATTTTGTTGGATAGTAGACAGGGACAGTG 6572 Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACT 407 |||| |||||||| |||||||||| ||| || Sbjct 6573 GGAA--TCGTTAATTCATTCATGCGTGTCGCT 6602 Score = 145 bits (160), Expect = 2e-32 Identities = 100/112 (89%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| |||| ||| |||||||||| |||| |||| ||| |||||||||| Sbjct 3876 GAATAAGTAAAATAACGTTAAAACCAGTGGTATTTTACTTTCGCCCAAA-GGCTCCCACT 3934 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3935 TATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 3986 Score = 131 bits (144), Expect = 5e-28 Identities = 103/122 (84%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| | ||| ||| ||||||||||| |||| | || |||||||||| ||||| Sbjct 3756 CTTTTGTTTCACACGAGGTTTCTGTTCTCGTTGAGCTCATCTGAGGACACCTGTGTTATT 3815 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||| Sbjct 3816 -TTTAACAGATGTGCCGCCCCAGCCAAACTCCTCACCTGACAACGTCTTCCACCCGGATC 3874 Query 127 GG 128 || Sbjct 3875 GG 3876 >seq319 Length=238057 Score = 114 bits (126), Expect = 4e-23 Identities = 104/137 (76%), Gaps = 22/137 (16%) Strand=Plus/Plus Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 ||||||| |||||||||||| |||| || ||| |||||||||| |||| ||| Sbjct 235738 ACAGTGGAAATCTCGTTAATTCATTTATACGCATCACTAATTAAATGATGAG-------- 235789 Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 |||||||||| | | | ||||||||||||||||||||||||||||| Sbjct 235790 --------------TCATAGTTACCCTCACGGTTTACCCGCGCTTGGTTGAATTTCTTCA 235835 Query 490 CTTTGACATTCAGAGCA 506 ||||||||||||||||| Sbjct 235836 CTTTGACATTCAGAGCA 235852 >seq142 Length=307014 Score = 100 bits (110), Expect = 9e-19 Identities = 105/143 (73%), Gaps = 24/143 (17%) Strand=Plus/Minus Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||| |||||||||||||||||| |||| || |||| ||||||||| |||| ||| Sbjct 151383 AGGGATAGTGGGAATCTCGTTAATTCATTTATACGCGACACTAATTAAATGATGAG---- 151328 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTAC--TCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 |||||||||| || | ||||| ||||||||||||||||| Sbjct 151327 ------------------TCATAGTTACCTTCGTGTGGTTTATCCGCGCTTGGTTGAATT 151286 Query 484 TCTTCACTTTGACATTCAGAGCA 506 | |||||||||||||||| |||| Sbjct 151285 TTTTCACTTTGACATTCAAAGCA 151263 >seq1528 Length=117507 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 41300 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 41359 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 41360 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 41405 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 44175 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 44234 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 44235 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 44280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634972985184