Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1528 187 8e-45 seq1022 91.5 5e-16 >seq1528 Length=117507 Score = 187 bits (206), Expect = 8e-45 Identities = 235/325 (72%), Gaps = 17/325 (5%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | | |||||||||| ||||| | Sbjct 44042 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAGGTGCA 44101 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 44102 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 44161 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| |||||||||||||||| ||||| | Sbjct 44162 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 44221 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||| Sbjct 44222 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 44281 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| || | ||||| | |||| |||||||||||||| Sbjct 44282 CATTCAAAGCTTATCACACTTC----------------TCCTTCCGACCTTCCAGCACCG 44325 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||| ||||| | ||||| ||| Sbjct 44326 GGCAGGTGTCAGACTCTATACATCG 44350 Score = 154 bits (170), Expect = 5e-35 Identities = 161/215 (75%), Gaps = 16/215 (7%) Strand=Plus/Plus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||||||| | || |||||||| ||| ||||||||| |||||||||||||||| Sbjct 41277 AATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCG 41336 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| |||||||||||||||||||||||||| |||| |||||| |||||||||| Sbjct 41337 CTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTA 41396 Query 470 CTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCT 529 | |||||||| ||| || | ||||| | |||| |||| Sbjct 41397 CCGGGGCTTCCATTCAAAGCTTATCACACTTC----------------TCCTTCCGACCT 41440 Query 530 TCCAGCACCGGGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||||||| ||||| | ||||| ||| Sbjct 41441 TCCAGCACCGGGCAGGTGTCAGACTCTATACATCG 41475 >seq1022 Length=148759 Score = 91.5 bits (100), Expect = 5e-16 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 |||||||| ||||||| |||| ||||||||| || |||||||||||||||||||||| | Sbjct 57343 GTTACGCCTTTCGTGCGGGTCAGAACTTACC-GATAAGGAATTTCGCTACCTTAGGAACG 57401 Query 448 TTATAGTTACCACCG 462 ||||||||| |||| Sbjct 57402 CTATAGTTACGACCG 57416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702163655808