Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq3182 105 1e-20 seq1483 75.2 2e-11 >seq3182 Length=65167 Score = 105 bits (116), Expect = 1e-20 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 ||||||||||||| || |||| | |||||||| | | | ||| ||| || ||||| Sbjct 23944 ACGAGAGGAACCGTTGA-TTCACAC-AATTGGTTATCGTGCTTGTTTGAAAAGCCAGTGG 24001 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGA 122 ||||||||||| | ||| |||||||| ||||||||||||||||||||||||| || || Sbjct 24002 TGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAGC 24061 Query 123 ACGGGGTGATTCTCTCC 139 | | || | ||| ||| Sbjct 24062 AAGTGGCGCCTCTGTCC 24078 >seq1483 Length=119601 Score = 75.2 bits (82), Expect = 2e-11 Identities = 90/120 (75%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 |||||||||||| | || |||| | |||| || | ||| || ||| || |||| Sbjct 15605 TACGAGAGGAACAGTTGA-TTCACAC-AATTAGTCATCGCGCTTGGTTGAAAAGCAAGTG 15548 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 |||||||||||| | || | |||||| | |||||||||||| |||||||||| || || Sbjct 15547 GCGCGAAGCTACCGTGTGTCGAATTATGACCGAACGCCTCTAAATCAGAATCCAAGCTAG 15488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819089824512