Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1443 129 5e-25 seq3634 125 6e-24 >seq1443 Length=121453 Score = 129 bits (142), Expect = 5e-25 Identities = 472/732 (64%), Gaps = 14/732 (2%) Strand=Plus/Minus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||| | || ||||| ||||| |||||||| ||||| ||||| | || Sbjct 26099 CACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCCGC 26040 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | || ||||| || | |||||||| ||||||||||||||||| ||||| Sbjct 26039 TTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATC 25980 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| ||||||||||||||||| | || | || ||||||||| | || | || Sbjct 25979 GAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACGTACATCCGCGACGGCGCC 25920 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 || || || | ||| |||||||||||| | || || || || || || || Sbjct 25919 GAGAAGGACCGCCTCTTCCGCGCCATCGAGACGGTCCCCGCCGTCCGCCGCAAGGCCGAG 25860 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCAT 61501 |||||| | |||||| || |||| | || | || || | | || | Sbjct 25859 TGGGCCATGCGCTGGATC-----GACGGCGGCGAGCGCTTCGCCGAGCGCCTAGTCGCCT 25805 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || |||||||| | || ||| || || || ||| ||||| ||| | |||| Sbjct 25804 TCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGA 25745 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | || || || ||||| || || |||||| ||| ||| | || || |||||||||||| Sbjct 25744 AGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCC 25685 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGG 61681 | || || || || || | || | | | | | || | | | | || | ||| Sbjct 25684 TCCACTGCGACTTCGCCTGCCTCCTCTACGACCTC-CTCCGCGGCA-AGCTCGAC-GAGT 25628 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGA 61739 || || | ||||| || || || || ||||| | || || |||| || Sbjct 25627 CCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTG--CGA 25570 Query 61740 CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATT 61799 ||| | || | | ||| |||||||||| | | || ||| ||||| || || || Sbjct 25569 CGCGCTCCCATGCGCGCTCGTCGGCATGAACGGCGTGCTCATGAGCCAGTACATCGAGTT 25510 Query 61800 TGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCC 61859 || |||||||| ||| | | | |||| ||| ||| || || | ||||| Sbjct 25509 CGTCGCCGACCGCCTGCTCATGGCACTGGGGCACAAGAAGATGTACAACGTCACCAACCC 25450 Query 61860 ATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGT 61919 ||| || | ||||| | || || ||| | |||||||| || || |||||||| || || Sbjct 25449 ATTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 25390 Query 61920 AGGCGACTATCA 61931 ||||| || || Sbjct 25389 CGGCGAGTACCA 25378 >seq3634 Length=55208 Score = 125 bits (138), Expect = 6e-24 Identities = 290/436 (67%), Gaps = 7/436 (2%) Strand=Plus/Minus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||| | || ||||| ||||| |||||||| ||||| ||||| | || Sbjct 967 CACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCCGC 908 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| | || ||||| || | |||||||| ||||||||||||||||| ||||| Sbjct 907 TTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATC 848 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 ||||| ||||||||||||||||| | || | || ||||||||| | || | || Sbjct 847 GAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACGTACATCCGCGACGGCGCC 788 Query 61384 GAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGAT 61443 || || || | ||| |||||||||||| | || || || || || || || Sbjct 787 GAGAAGGACCGCCTCTTCCGCGCCATCGAGACGGTCCCCGCCGTCCGCCGCAAGGCCGAG 728 Query 61444 TGGGCCTTCAATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCAT 61501 |||||| | |||||| || |||| | || | || || | | || | Sbjct 727 TGGGCCATGCGCTGGATC-----GACGGCGGCGAGCGCTTCGCCGAGCGCCTAGTCGCCT 673 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || |||||||| | || ||| || || || ||| ||||| ||| | |||| Sbjct 672 TCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGA 613 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | || || || ||||| || || |||||| ||| ||| | || || |||||||||||| Sbjct 612 AGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCC 553 Query 61622 TGCATTGTGATTTTGC 61637 | || || || || || Sbjct 552 TCCACTGCGACTTCGC 537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397500731867120