Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq5025 150 2e-31 seq6788 113 5e-20 seq1910 113 5e-20 seq300 107 2e-18 seq4399 104 3e-17 seq2985 102 9e-17 seq334 86.0 7e-12 >seq5025 Length=34140 Score = 150 bits (166), Expect = 2e-31 Identities = 231/326 (71%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 ||||||||| | | | || |||||||||||||| || ||||| | || | || ||| Sbjct 14216 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCTTT 14157 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || ||||||| | ||| | || |||||| |||| || || ||||| | || ||| Sbjct 14156 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 14097 Query 161647 TATACCCATGGACTCGCTAGTTCCTATCTTGAGGGT-GCAAATTTTCTTA-CAGCGGCAG 161704 |||||||||||| | |||||||||||| | || ||| |||| ||||||| | || || | Sbjct 14096 TATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACGGCAGCGG 14039 Query 161705 TTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTC 161764 || ||| || || | | | | || ||| | | || || ||||| || || || | Sbjct 14038 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCAC 13979 Query 161765 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 161824 |||||||||| | ||| ||| | || || || |||| |||||| || || || | Sbjct 13978 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTACATG 13919 Query 161825 GGGCTTTCGCTCTGATTGGATTCATG 161850 ||||||| || || || || |||||| Sbjct 13918 GGGCTTTTGCACTAATAGGTTTCATG 13893 >seq6788 Length=15930 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 6666 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 6607 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCC 159922 |||||||| || | ||| | |||||| | || || ||||||||||||||||||| Sbjct 6606 ATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCT 6547 Query 159923 CCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAAC 159982 || || || || ||||| || ||||| || || ||||||| | | || || ||||| Sbjct 6546 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 6487 Query 159983 ATCATCTCTGGT 159994 || ||||||||| Sbjct 6486 ATTATCTCTGGT 6475 >seq1910 Length=102200 Score = 113 bits (124), Expect = 5e-20 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 ||||||||| | | | || |||||||||||||| || ||||| || || | || ||| Sbjct 8353 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTACTCTTT 8412 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || ||||||| | ||| | || |||||| |||| || || ||||| | || ||| Sbjct 8413 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 8472 Query 161647 TATACCCATGGACTCGCTAGTTCCTATCTTG-AGGGTGCAAATTTTCTT-ACAGCGGCAG 161704 |||||||||||| | |||||||||||| | | ||| ||||| |||||| || || || | Sbjct 8473 TATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACGGCAGCGG 8530 Query 161705 TTAGCACTCCAGC 161717 || ||| || || Sbjct 8531 TTTCCACCCCTGC 8543 >seq300 Length=244684 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032 |||| || |||||||| || || ||||| || || ||||| || || ||||| |||| Sbjct 146220 TCCTCGATGCTGCTGAGGATGCTGGTGTGGAGTTGCCATACTCATGCCGCGCTGGGGCTT 146161 Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092 ||||||| || |||||||| |||||| ||| |||||||| || ||| ||| |||| Sbjct 146160 GCTCTACCTGCGCTGGTAAAATTGAGGCTGGCGAGGTAGATCAGTCGGATGGATCCTTCC 146101 Query 161093 TGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTG 161152 | ||||||| || | | ||| | ||| ||||| ||||| | || |||| |||| Sbjct 146100 TCGATGATGGGCAGCAGGCTGAAGGCTATGTGCTGACATGCGTGTCGTACCCCAAGTCTG 146041 Query 161153 AT 161154 || Sbjct 146040 AT 146039 >seq4399 Length=42927 Score = 104 bits (114), Expect = 3e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 162205 TCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAG 162264 || ||||||||||| ||||| || ||||| || ||||| ||| |||||||| ||||| Sbjct 11127 TCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAA 11186 Query 162265 CGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCA 162301 |||||||| |||||||||||||| || || ||||||| Sbjct 11187 CGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 11223 >seq2985 Length=69808 Score = 102 bits (112), Expect = 9e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032 |||| ||||||||||| || || ||||| || || ||||| || || ||||| |||| Sbjct 54253 TCCTCGACGCTGCTGAGGATGCTGGTGTGGAGTTGCCATACTCATGCCGCGCTGGGGCTT 54312 Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092 |||| || || ||||| || |||||| ||| |||||||| || ||| ||| |||| Sbjct 54313 GCTCCACCTGCGCTGGCAAAATTGAGGCTGGCGAGGTAGATCAGTCGGATGGATCCTTCC 54372 Query 161093 TGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTG 161152 | ||||||| || | | ||| | ||| ||||| ||||| | || |||| |||| Sbjct 54373 TTGATGATGGGCAGCAGGCTGAAGGCTATGTGCTGACATGCGTGTCGTACCCCAAGTCTG 54432 Query 161153 A 161153 | Sbjct 54433 A 54433 >seq334 Length=235784 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 162362 ACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCA 162421 |||| || || ||||| || ||||||||||| |||||||||||||| || |||||||| Sbjct 148217 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACAC-- 148274 Query 162422 AGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCA 162462 | || || || || || || ||| ||||||| || ||||| Sbjct 148275 AAAAAATTCTTTTAAACGAGGGTATTCGTGCGTGTATGGCA 148315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551280315587400