Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq6788 104 3e-17 seq4399 95.1 2e-14 seq334 87.8 2e-12 >seq6788 Length=15930 Score = 104 bits (114), Expect = 3e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 || ||||| || |||| ||||| ||||| ||||||||||||| ||| | | | ||||| Sbjct 6639 AATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 6581 Query 188937 CATCTGCTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGA 188996 | || || ||||||| ||||||| || || ||||| |||||||| || || || Sbjct 6580 TTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 6521 Query 188997 ACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGT 189042 || || ||||||| | | ||||||||||| || ||||||||| Sbjct 6520 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGT 6475 >seq4399 Length=42927 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 190675 ATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATA 190734 |||| ||||| ||||| ||||| || ||||| ||||||||||||||||| || |||| Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 190735 AGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGT 190771 | | ||||| |||||||||||||| ||||| || || Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGT 11221 >seq334 Length=235784 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 190831 ATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACA 190890 || |||| || ||||| || ||| | ||||| |||||||| || || |||||||| |||| Sbjct 148214 ATCACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACA 148273 Query 190891 CAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCC 190950 |||||| || ||||| || || ||| ||||| | || ||||| || ||||| |||| Sbjct 148274 CAAAAA--ATTCTTTTAAACGAGGGTATTCGTGCGTGTATGGCAGCTCAGGATCAGCCCC 148331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633969963342000