Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq6788 131 2e-25 seq5025 111 2e-19 seq4399 98.7 1e-15 >seq6788 Length=15930 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | ||| ||||| || | |||||||||||| |||| ||||| ||||| || Sbjct 6666 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 6607 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCC 160691 |||||||| || | ||| | ||||| | ||||||| || ||| | |||||||| Sbjct 6606 ATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCT 6547 Query 160692 CCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAAC 160751 || || || || || ||||| ||||| || ||| ||||||| | | ||||||||||| Sbjct 6546 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 6487 Query 160752 ATCATCTCTGGT 160763 || ||||||||| Sbjct 6486 ATTATCTCTGGT 6475 >seq5025 Length=34140 Score = 111 bits (122), Expect = 2e-19 Identities = 225/330 (68%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 ||||||||||| | | | || || || || ||||| || ||||| | || | || | Sbjct 14218 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCT 14159 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 |||| ||||||| | || | || || ||| |||| || || || ||||| || || Sbjct 14158 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 14099 Query 164017 GGTACACCCACGGTCTCGCGTCTAGTTAC--CTTG--AGGGTGCTAATTTCCTTACAGCG 164072 |||| ||||| || | | |||||| | ||| ||| ||| |||||| | || || Sbjct 14098 GGTATACCCATGGATTAG---CTAGTTCCTATTTGGAAGGTTGC-AATTTCTTAACGGCA 14043 Query 164073 GCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 164132 || || || || ||||| || | | | || ||| | | ||||| ||||| || || Sbjct 14042 GCGGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAA 13983 Query 164133 TCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTC 164192 | || ||||| || | | | ||||| ||| | || || || ||| ||||||| || | Sbjct 13982 GCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTA 13923 Query 164193 CACGGATCTTTCGCTCTGATCGGTTTCATG 164222 || || |||| || || || ||||||||| Sbjct 13922 CATGGGGCTTTTGCACTAATAGGTTTCATG 13893 >seq4399 Length=42927 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 164577 TCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAG 164636 || ||||| ||||| |||||||| ||||| || || |||||| ||||||| |||||| Sbjct 11127 TCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAA 11186 Query 164637 CGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCA 164673 |||||||| || ||||||||||| ||||| || |||| Sbjct 11187 CGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 11223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559230935617200