Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq12052 192 1e-46 seq1743212 87.8 3e-15 seq203887 84.2 4e-14 seq59432 78.8 2e-12 >seq12052 Length=1219 Score = 192 bits (212), Expect = 1e-46 Identities = 239/325 (74%), Gaps = 7/325 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| ||| | | ||||||| || ||||| | | || Sbjct 159 AGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTTAGGCG 218 Query 71 -GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 ||||| |||| ||||||| |||||| | | ||| ||| | || ||| ||||||| Sbjct 219 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCTGTAGCAAGGTTAAC 277 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | || |||||||| |||| |||| |||||| ||||| ||||| || Sbjct 278 CGAATAGGGG-----AGCCGAAGGGAAACCGAGTCTTAACTGGGCGTTAAGTTGCAGGGT 332 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| |||||||| ||| | ||||||||||| |||||| | || Sbjct 333 ATAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTG 392 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 ||||||||||||| || |||||||| || ||||||||| | || | ||||||||||| Sbjct 393 GAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGG 452 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 |||||||||| |||| |||||| || Sbjct 453 CCAATCAAACCGGGAGATAGCTGGT 477 >seq1743212 Length=208 Score = 87.8 bits (96), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| |||||| || |||||| ||| ||| | ||||| ||| ||||| Sbjct 146 TACCCCGGG-AGGGGAGTGAAAGAGTTCCTGAAACCGGTCGCATGCAAGCCGTCAGAGCC 88 Query 61 GAGTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120 ||| ||||| ||||||||||||| | ||||||||| ||||||||| || || Sbjct 87 T-GTGT---GGTGATGGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGTGGTATGTCGC 32 Query 121 GAGGTTAA 128 |||||||| Sbjct 31 GAGGTTAA 24 >seq203887 Length=1855 Score = 84.2 bits (92), Expect = 4e-14 Identities = 211/312 (68%), Gaps = 14/312 (4%) Strand=Plus/Plus Query 17 GTGAAATAGACCCTGAACCCGCGC---GCCTACAAGCGGTCGGAGCCGA--GTGATTCGG 71 |||||||||| | |||| ||| || || ||||| || |||| || ||||| | Sbjct 526 GTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGAT-CTC 584 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 585 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 643 Query 132 --CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | | | ||||| || ||||||||| ||||| ||||||| || || Sbjct 644 AACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATT-GTCACTGCTT 702 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| | | | ||| | Sbjct 703 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCA 762 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 763 --GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 820 Query 308 GGCCAATCAAAC 319 |||| || ||| Sbjct 821 TGCCACTCGAAC 832 >seq59432 Length=1711 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 685 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 744 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 745 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 804 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 805 AACCAAGATCGGATATAGCTGGT 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 955110410240