Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq12052 192 1e-46
seq1743212 87.8 3e-15
seq203887 84.2 4e-14
seq59432 78.8 2e-12
>seq12052
Length=1219
Score = 192 bits (212), Expect = 1e-46
Identities = 239/325 (74%), Gaps = 7/325 (2%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||| ||| |||||| ||| | | ||||||| || ||||| | | ||
Sbjct 159 AGGGGAGTGAAAAAGAACCTGAAACCGTGTACGTACAAGCAGTGGGAGCACGCTTAGGCG 218
Query 71 -GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129
||||| |||| ||||||| |||||| | | ||| ||| | || ||| |||||||
Sbjct 219 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCTGTAGCAAGGTTAAC 277
Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
| | || |||||||| |||| |||| |||||| ||||| ||||| ||
Sbjct 278 CGAATAGGGG-----AGCCGAAGGGAAACCGAGTCTTAACTGGGCGTTAAGTTGCAGGGT 332
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249
||||| ||||||| |||||||| ||| | ||||||||||| |||||| | ||
Sbjct 333 ATAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTG 392
Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309
||||||||||||| || |||||||| || ||||||||| | || | |||||||||||
Sbjct 393 GAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGG 452
Query 310 CCAATCAAACTGGGAAATAGCTCGT 334
|||||||||| |||| |||||| ||
Sbjct 453 CCAATCAAACCGGGAGATAGCTGGT 477
>seq1743212
Length=208
Score = 87.8 bits (96), Expect = 3e-15
Identities = 98/128 (77%), Gaps = 5/128 (4%)
Strand=Plus/Minus
Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60
|| |||| | ||||| |||||| || |||||| ||| ||| | ||||| ||| |||||
Sbjct 146 TACCCCGGG-AGGGGAGTGAAAGAGTTCCTGAAACCGGTCGCATGCAAGCCGTCAGAGCC 88
Query 61 GAGTGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120
||| ||||| ||||||||||||| | ||||||||| ||||||||| || ||
Sbjct 87 T-GTGT---GGTGATGGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGTGGTATGTCGC 32
Query 121 GAGGTTAA 128
||||||||
Sbjct 31 GAGGTTAA 24
>seq203887
Length=1855
Score = 84.2 bits (92), Expect = 4e-14
Identities = 211/312 (68%), Gaps = 14/312 (4%)
Strand=Plus/Plus
Query 17 GTGAAATAGACCCTGAACCCGCGC---GCCTACAAGCGGTCGGAGCCGA--GTGATTCGG 71
|||||||||| | |||| ||| || || ||||| || |||| || ||||| |
Sbjct 526 GTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGAT-CTC 584
Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||||
Sbjct 585 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 643
Query 132 --CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
| | | | ||||| || ||||||||| ||||| ||||||| || ||
Sbjct 644 AACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATT-GTCACTGCTT 702
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGA 247
| ||| |||| | |||||||| ||| || |||| ||||| | | | ||| |
Sbjct 703 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCA 762
Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307
|||| |||||||| | |||||| | | ||||||| | | || |||||||||||
Sbjct 763 --GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 820
Query 308 GGCCAATCAAAC 319
|||| || |||
Sbjct 821 TGCCACTCGAAC 832
>seq59432
Length=1711
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| |||||| ||| ||||||||||||| || |||| | ||||
Sbjct 685 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 744
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 745 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 804
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 805 AACCAAGATCGGATATAGCTGGT 827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 955110410240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |