Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq229976 389 6e-106
seq501782 284 2e-74
seq1741358 282 6e-74
seq536982 280 2e-73
seq579307 250 4e-64
seq595012 208 1e-51
seq1488114 199 6e-49
seq501781 199 6e-49
seq121707 199 6e-49
seq53245 187 4e-45
seq647521 178 2e-42
seq837785 167 3e-39
seq134688 161 1e-37
seq506662 109 8e-22
seq598765 86.0 9e-15
>seq229976
Length=1330
Score = 389 bits (430), Expect = 6e-106
Identities = 242/256 (95%), Gaps = 3/256 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 1246 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 1189
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1188 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCAAGATTA 1129
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1128 CCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 1069
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1068 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACG 1009
Query 241 GCCAT-CTCCCTCGAA 255
|| || |||||| ||
Sbjct 1008 GCGATAGTCCCTCTAA 993
>seq501782
Length=227
Score = 284 bits (314), Expect = 2e-74
Identities = 181/194 (93%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACC 122
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 227 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACC 168
Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182
||| |||||||||||||| ||| ||||||||||||||||||||||| ||| |||| |||
Sbjct 167 CGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGTGCGTGTGCAGCC 108
Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGC 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 107 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGC 48
Query 243 CAT-CTCCCTCGAA 255
||| |||||| ||
Sbjct 47 CATAGTCCCTCTAA 34
>seq1741358
Length=230
Score = 282 bits (312), Expect = 6e-74
Identities = 201/226 (89%), Gaps = 5/226 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| |
Sbjct 222 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 165
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
||||||||||| ||| |||| ||||| |||||||||| ||||| | | ||||| ||||||
Sbjct 164 CTCGTTGAAGAGCAATAATTACAATGCTCTATCCCCAGCACGACGGAGTTTCACAAGATT 105
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| ||||| ||||||||||| |||||||| || | | |||||||||||||||||||
Sbjct 104 ACCAAGACCTCTCGGCCAAGGT--TAGACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 47
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 46 GCCCAGNACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 1
>seq536982
Length=202
Score = 280 bits (310), Expect = 2e-73
Identities = 180/194 (93%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACC 122
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACC 60
Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182
||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 61 CGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTATAGCGCGCGTGCGACC 120
Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGC 242
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 121 CAGAACATCTAAGGGCATCATAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGC 180
Query 243 CAT-CTCCCTCGAA 255
||| |||||| ||
Sbjct 181 CATAGTCCCTCTAA 194
>seq579307
Length=212
Score = 250 bits (276), Expect = 4e-64
Identities = 165/180 (92%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 78 ATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCC 136
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 212 ATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCC 153
Query 137 AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 196
|||| ||| ||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 152 AAGGCTATATACTCGTTGAATACATCAGTGTAGTGAGCATGCGGCCCAGAACATCTAAGG 93
Query 197 GCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255
|||||||||||||||||||||||||||||||||| ||||||| ||| || |||||| ||
Sbjct 92 GCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAA 33
>seq595012
Length=204
Score = 208 bits (230), Expect = 1e-51
Identities = 133/141 (94%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||| ||| |
Sbjct 60 GTACAAAGGGCAGGGACGTAGTTAACGTGAGCT-GATGACTCGCGCTTACTAGGCATT-C 117
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 118 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 177
Query 120 ACCCGGACCTGTCGGCCAAGG 140
|||||| ||||||||||||||
Sbjct 178 ACCCGGGCCTGTCGGCCAAGG 198
>seq1488114
Length=331
Score = 199 bits (220), Expect = 6e-49
Identities = 131/141 (93%), Gaps = 3/141 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||| |
Sbjct 139 GTACAAAGGGCAGGGNCGTAGTCAACGCGAGCT-GATGACTCACGCTTACAAGGCATT-C 82
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119
||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 81 CTCATTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 22
Query 120 ACCCGGACCTGTCGGCCAAGG 140
|||||| ||||||||||||||
Sbjct 21 ACCCGGGCCTGTCGGCCAAGG 1
>seq501781
Length=224
Score = 199 bits (220), Expect = 6e-49
Identities = 131/141 (93%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||| |||||||||| |||||||||||| ||| ||||||||||||||||||| ||| |
Sbjct 80 GTACAGAGGGCAGGGATGTAGTCAACGCGGGCTA-ATGACTCGCGCTTACTAGGCATT-C 137
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 138 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 197
Query 120 ACCCGGACCTGTCGGCCAAGG 140
|||||| ||||||||||||||
Sbjct 198 ACCCGGGCCTGTCGGCCAAGG 218
>seq121707
Length=5994
Score = 199 bits (220), Expect = 6e-49
Identities = 146/167 (87%), Gaps = 2/167 (1%)
Strand=Plus/Minus
Query 91 ATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACT 149
|||||||||||||| ||||||| || |||| || | |||||| ||||||| ||| |||
Sbjct 763 ATCCCCATCACGATTAAATTTCCCAATATTATCCAGGCCTGTCAGCCAAGGCTATATACT 704
Query 150 CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 209
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 703 CGTTGAATACATCAGTGTAGCGCGCGTGCAGTCCAGAACATCTAAGGGCATCACAGACCT 644
Query 210 GTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255
|||||||||||||||| |||| ||||||| || || |||||| ||
Sbjct 643 GTTATTGCCTCAAACTACCGTCGCCTAAATAGCGATAGTCCCTCTAA 597
>seq53245
Length=3146
Score = 187 bits (206), Expect = 4e-45
Identities = 202/258 (78%), Gaps = 11/258 (4%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||| ||| ||| ||||| ||| ||||| |||||| |
Sbjct 50 GTACAAAGGGCAGGGACGTAATCAAGGCGTGCTA-ATGACACGCCTTTACTGGGAATT-C 107
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | ||||||| ||| | ||||| | ||||| | ||||| | ||
Sbjct 108 CTCGTTCATGGGGAACAATTTCAAGCCCCAATCCCAAGCACGAAGGTGTTTCAGCGGGTT 167
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||||||| ||||||| || | ||| || ||| | ||| |||||||||||||||
Sbjct 168 ACCCGGACCTTTCGGCCAGGGAG---GACACGCTGATACCTTCATTGTAGCGCGCGTGCG 224
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238
||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| |
Sbjct 225 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 281
Query 239 AGGC-CATCTCCCTCGAA 255
|| | | | |||||| ||
Sbjct 282 AGCCGCCTGTCCCTCTAA 299
>seq647521
Length=200
Score = 178 bits (196), Expect = 2e-42
Identities = 118/130 (91%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 60
Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT- 245
||||||||||||||||||||||||||||||||||||| |||| | | ||||| ||| ||
Sbjct 61 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAGTTCCATCGGCTAAACGGCGATA 120
Query 246 CTCCCTCGAA 255
|||||| ||
Sbjct 121 GTCCCTCTAA 130
>seq837785
Length=672
Score = 167 bits (184), Expect = 3e-39
Identities = 103/109 (94%), Gaps = 1/109 (1%)
Strand=Plus/Minus
Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 125 CTCGTTGAATACATCAGTGTAGCGCGCGTATGGCCCAGAACATCTAAGGGCATCACAGAC 66
Query 208 CTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255
||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 65 CTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAA 17
Score = 132 bits (146), Expect = 7e-29
Identities = 85/90 (94%), Gaps = 2/90 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||| |
Sbjct 211 GTACAAAGGGCAGGGACGTGGTCAACGCGAGCT-GATGACTAGCGCTTACTAGGCATT-C 154
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCT 90
||||||||||||||||||||||||||||||
Sbjct 153 CTCGTTGAAGACCAACAATTGCAATGATCT 124
>seq134688
Length=432
Score = 161 bits (178), Expect = 1e-37
Identities = 169/216 (78%), Gaps = 12/216 (6%)
Strand=Plus/Minus
Query 9 GGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGA 68
|||||||||||| ||||||| |||| ||||||| |||||||| |||||| ||||||| |
Sbjct 432 GGCAGGGACGTAATCAACGCAAGCTA-ATGACTCACGCTTACTGGGAATT-CCTCGTTCA 375
Query 69 AGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT---TTCAAA-GATTACCCG 124
| ||| |||| ||||| | ||||||||||||| ||| ||||| | ||||||
Sbjct 374 TGGGCAATAATTACAATGCCCAATCCCCATCACGA---AATGGGTTCAAGCGGTTACCCA 318
Query 125 GACCTGTCGGCCAAGGTGATAGACT---CGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181
||| |||| ||| | || | || ||| || |||||||||| ||||||||||
Sbjct 317 CTCCTTTCGGAGCAGGAAACAGTATGCACGATGACCACTTCAGTGTAGCACGCGTGCGGC 258
Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|| | |||||||||||||||||||||||||||||||
Sbjct 257 CCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 222
>seq506662
Length=231
Score = 109 bits (120), Expect = 8e-22
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGG 241
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 231 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCTGTGGCCTAAATGG 172
Query 242 CCAT-CTCCCTCGAA 255
|||| |||||| ||
Sbjct 171 CCATAGTCCCTCTAA 157
>seq598765
Length=203
Score = 86.0 bits (94), Expect = 9e-15
Identities = 92/130 (71%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186
|||||||||||||| ||| |||||||||||||||||||||||
Sbjct 203 CCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGNNNNNNNNNNNNNNNNN 144
Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT- 245
|||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 143 NNNNNNNNNNNNATCACAGACCTGTTATTGCCTCAAACTTTTGTGGCCTAAACGGCCATA 84
Query 246 CTCCCTCGAA 255
|||||| ||
Sbjct 83 GTCCCTCTAA 74
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 738752810300
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