Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq229976 389 6e-106 seq501782 284 2e-74 seq1741358 282 6e-74 seq536982 280 2e-73 seq579307 250 4e-64 seq595012 208 1e-51 seq1488114 199 6e-49 seq501781 199 6e-49 seq121707 199 6e-49 seq53245 187 4e-45 seq647521 178 2e-42 seq837785 167 3e-39 seq134688 161 1e-37 seq506662 109 8e-22 seq598765 86.0 9e-15 >seq229976 Length=1330 Score = 389 bits (430), Expect = 6e-106 Identities = 242/256 (95%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 1246 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 1189 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1188 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCAAGATTA 1129 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1128 CCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 1069 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 1068 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACG 1009 Query 241 GCCAT-CTCCCTCGAA 255 || || |||||| || Sbjct 1008 GCGATAGTCCCTCTAA 993 >seq501782 Length=227 Score = 284 bits (314), Expect = 2e-74 Identities = 181/194 (93%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACC 122 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 227 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACC 168 Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182 ||| |||||||||||||| ||| ||||||||||||||||||||||| ||| |||| ||| Sbjct 167 CGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGTGCGTGTGCAGCC 108 Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGC 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 107 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGC 48 Query 243 CAT-CTCCCTCGAA 255 ||| |||||| || Sbjct 47 CATAGTCCCTCTAA 34 >seq1741358 Length=230 Score = 282 bits (312), Expect = 6e-74 Identities = 201/226 (89%), Gaps = 5/226 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| | Sbjct 222 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 165 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||| ||||| |||||||||| ||||| | | ||||| |||||| Sbjct 164 CTCGTTGAAGAGCAATAATTACAATGCTCTATCCCCAGCACGACGGAGTTTCACAAGATT 105 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||||| ||||||||||| |||||||| || | | ||||||||||||||||||| Sbjct 104 ACCAAGACCTCTCGGCCAAGGT--TAGACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 47 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 46 GCCCAGNACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 1 >seq536982 Length=202 Score = 280 bits (310), Expect = 2e-73 Identities = 180/194 (93%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 64 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACC 122 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 GTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACC 60 Query 123 CGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCC 182 ||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||| || Sbjct 61 CGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTATAGCGCGCGTGCGACC 120 Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGC 242 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| Sbjct 121 CAGAACATCTAAGGGCATCATAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGC 180 Query 243 CAT-CTCCCTCGAA 255 ||| |||||| || Sbjct 181 CATAGTCCCTCTAA 194 >seq579307 Length=212 Score = 250 bits (276), Expect = 4e-64 Identities = 165/180 (92%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 78 ATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCC 136 ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 212 ATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCC 153 Query 137 AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 196 |||| ||| ||||||||||||||||||||||| | || ||||||||||||||||||||| Sbjct 152 AAGGCTATATACTCGTTGAATACATCAGTGTAGTGAGCATGCGGCCCAGAACATCTAAGG 93 Query 197 GCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 |||||||||||||||||||||||||||||||||| ||||||| ||| || |||||| || Sbjct 92 GCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAA 33 >seq595012 Length=204 Score = 208 bits (230), Expect = 1e-51 Identities = 133/141 (94%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||| |||| ||||| |||||||||||||||||||| ||| | Sbjct 60 GTACAAAGGGCAGGGACGTAGTTAACGTGAGCT-GATGACTCGCGCTTACTAGGCATT-C 117 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 118 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 177 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||||| |||||||||||||| Sbjct 178 ACCCGGGCCTGTCGGCCAAGG 198 >seq1488114 Length=331 Score = 199 bits (220), Expect = 6e-49 Identities = 131/141 (93%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||| | Sbjct 139 GTACAAAGGGCAGGGNCGTAGTCAACGCGAGCT-GATGACTCACGCTTACAAGGCATT-C 82 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 81 CTCATTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 22 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||||| |||||||||||||| Sbjct 21 ACCCGGGCCTGTCGGCCAAGG 1 >seq501781 Length=224 Score = 199 bits (220), Expect = 6e-49 Identities = 131/141 (93%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||| |||||||||| |||||||||||| ||| ||||||||||||||||||| ||| | Sbjct 80 GTACAGAGGGCAGGGATGTAGTCAACGCGGGCTA-ATGACTCGCGCTTACTAGGCATT-C 137 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 138 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 197 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||||| |||||||||||||| Sbjct 198 ACCCGGGCCTGTCGGCCAAGG 218 >seq121707 Length=5994 Score = 199 bits (220), Expect = 6e-49 Identities = 146/167 (87%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 91 ATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACT 149 |||||||||||||| ||||||| || |||| || | |||||| ||||||| ||| ||| Sbjct 763 ATCCCCATCACGATTAAATTTCCCAATATTATCCAGGCCTGTCAGCCAAGGCTATATACT 704 Query 150 CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 209 ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 703 CGTTGAATACATCAGTGTAGCGCGCGTGCAGTCCAGAACATCTAAGGGCATCACAGACCT 644 Query 210 GTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 |||||||||||||||| |||| ||||||| || || |||||| || Sbjct 643 GTTATTGCCTCAAACTACCGTCGCCTAAATAGCGATAGTCCCTCTAA 597 >seq53245 Length=3146 Score = 187 bits (206), Expect = 4e-45 Identities = 202/258 (78%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||| ||| ||||| ||| ||||| |||||| | Sbjct 50 GTACAAAGGGCAGGGACGTAATCAAGGCGTGCTA-ATGACACGCCTTTACTGGGAATT-C 107 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||| ||| | ||||| | ||||| | ||||| | || Sbjct 108 CTCGTTCATGGGGAACAATTTCAAGCCCCAATCCCAAGCACGAAGGTGTTTCAGCGGGTT 167 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| ||||||| || | ||| || ||| | ||| ||||||||||||||| Sbjct 168 ACCCGGACCTTTCGGCCAGGGAG---GACACGCTGATACCTTCATTGTAGCGCGCGTGCG 224 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 225 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 281 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 282 AGCCGCCTGTCCCTCTAA 299 >seq647521 Length=200 Score = 178 bits (196), Expect = 2e-42 Identities = 118/130 (91%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186 |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 60 Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT- 245 ||||||||||||||||||||||||||||||||||||| |||| | | ||||| ||| || Sbjct 61 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAGTTCCATCGGCTAAACGGCGATA 120 Query 246 CTCCCTCGAA 255 |||||| || Sbjct 121 GTCCCTCTAA 130 >seq837785 Length=672 Score = 167 bits (184), Expect = 3e-39 Identities = 103/109 (94%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 125 CTCGTTGAATACATCAGTGTAGCGCGCGTATGGCCCAGAACATCTAAGGGCATCACAGAC 66 Query 208 CTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||||||||||||||||||||||||||| |||||| |||||| || Sbjct 65 CTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAA 17 Score = 132 bits (146), Expect = 7e-29 Identities = 85/90 (94%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||| | Sbjct 211 GTACAAAGGGCAGGGACGTGGTCAACGCGAGCT-GATGACTAGCGCTTACTAGGCATT-C 154 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCT 90 |||||||||||||||||||||||||||||| Sbjct 153 CTCGTTGAAGACCAACAATTGCAATGATCT 124 >seq134688 Length=432 Score = 161 bits (178), Expect = 1e-37 Identities = 169/216 (78%), Gaps = 12/216 (6%) Strand=Plus/Minus Query 9 GGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGA 68 |||||||||||| ||||||| |||| ||||||| |||||||| |||||| ||||||| | Sbjct 432 GGCAGGGACGTAATCAACGCAAGCTA-ATGACTCACGCTTACTGGGAATT-CCTCGTTCA 375 Query 69 AGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT---TTCAAA-GATTACCCG 124 | ||| |||| ||||| | ||||||||||||| ||| ||||| | |||||| Sbjct 374 TGGGCAATAATTACAATGCCCAATCCCCATCACGA---AATGGGTTCAAGCGGTTACCCA 318 Query 125 GACCTGTCGGCCAAGGTGATAGACT---CGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 ||| |||| ||| | || | || ||| || |||||||||| |||||||||| Sbjct 317 CTCCTTTCGGAGCAGGAAACAGTATGCACGATGACCACTTCAGTGTAGCACGCGTGCGGC 258 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 || | ||||||||||||||||||||||||||||||| Sbjct 257 CCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 222 >seq506662 Length=231 Score = 109 bits (120), Expect = 8e-22 Identities = 70/75 (93%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGG 241 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 231 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCTGTGGCCTAAATGG 172 Query 242 CCAT-CTCCCTCGAA 255 |||| |||||| || Sbjct 171 CCATAGTCCCTCTAA 157 >seq598765 Length=203 Score = 86.0 bits (94), Expect = 9e-15 Identities = 92/130 (71%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 127 CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGA 186 |||||||||||||| ||| ||||||||||||||||||||||| Sbjct 203 CCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGNNNNNNNNNNNNNNNNN 144 Query 187 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT- 245 |||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 143 NNNNNNNNNNNNATCACAGACCTGTTATTGCCTCAAACTTTTGTGGCCTAAACGGCCATA 84 Query 246 CTCCCTCGAA 255 |||||| || Sbjct 83 GTCCCTCTAA 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738752810300