Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq229976 242 7e-62 seq544580 214 3e-53 seq53245 181 2e-43 seq748832 179 7e-43 seq774668 174 3e-41 seq803190 134 2e-29 seq836727 78.8 2e-12 seq1752517 77.0 6e-12 seq746967 77.0 6e-12 seq465880 77.0 6e-12 >seq229976 Length=1330 Score = 242 bits (268), Expect = 7e-62 Identities = 203/245 (83%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 356 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 415 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 416 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 474 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 475 TAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 534 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 535 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 593 Query 314 AGGGG 318 |||| Sbjct 594 GGGGG 598 >seq544580 Length=248 Score = 214 bits (236), Expect = 3e-53 Identities = 187/230 (81%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||| Sbjct 230 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCAT 171 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||| | | ||| ||||| |||||| | ||| || |||||||| Sbjct 170 GGGATAACATCATAGTAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 112 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||||||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 111 TAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 52 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||| ||| || |||||||| || |||||||||||||||||||||| Sbjct 51 GAAAGACGAACAACCGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 2 >seq53245 Length=3146 Score = 181 bits (200), Expect = 2e-43 Identities = 213/284 (75%), Gaps = 7/284 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || | ||| | |||||||||||||| ||||||||||| | Sbjct 988 TGCTCTTCATTGAGTGTCGAGGTGGGCCGGCACTTTTACTTTGAACAAATTAGAGTGCTT 929 Query 100 AAAGCAGGCCT----TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||| |||| |||| | |||||||||||| ||||||||| | |||| Sbjct 928 CAAGCAGGCTGGATATTGCCTGAATGCTAGTGCATGGAATAATGGAATAGGACCT-CGGT 870 Query 156 TCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 |||||||||||||||| || ||| | |||||||||||| | || || |||||| | Sbjct 869 TCTATTTTGTTGGTTTTCAGAACCAGAGGTAATGATTAATGGAGACAGGCGGGGGCATTC 810 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || ||||||||||||||||||| ||||| || |||||||| Sbjct 809 GTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACCGAAGCGAAAGCA 750 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||||||| || || |||| ||||||||||||| || Sbjct 749 TTTGCCAAGGATGTTCTCGTTGATCA-AGAACGAAAGTTAGAGG 707 >seq748832 Length=200 Score = 179 bits (198), Expect = 7e-43 Identities = 116/126 (92%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 200 ATAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 141 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||||||||||||||||||| || ||||||| |||||||||||||| |||||||||| Sbjct 140 AAGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCA-AGAACGAAAGT 82 Query 313 TAGGGG 318 |||||| Sbjct 81 TAGGGG 76 >seq774668 Length=4864 Score = 174 bits (192), Expect = 3e-41 Identities = 193/249 (78%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| || | ||| ||| | | || | |||||||||||||| Sbjct 1792 TTACTTTGAAGAAATTAGAGTGCTCGATGCAAGCCATCGTTCTGGATACATTAGCATGGG 1733 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | ||||| | |||| ||||| ||||| | |||| || || |||||||| Sbjct 1732 ATAAAATCGTAGGAT-TCCGGTCCTATTGTGTTGACCTTCAGGATCGAAGTGATGATTAA 1674 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGG-TGAAATTCTTGGATTTATTG 252 |||||| |||||||| ||| |||| | |||| | | | |||||||||||||||| Sbjct 1673 TAGGGACAGTCGGGGCATTCA-TATTTCGTAGTCACAAGATAAAATTCTTGGATTTATAA 1615 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG---TGAACGAA 309 |||||| || ||||||||||| || |||||||| ||||||||||||| ||||||| Sbjct 1614 AAGACTGACAACTGCGAAAGCATT-TGCAAGGATG-TTTCATTAATCAGGAAAGAACGAA 1557 Query 310 AGTTAGGGG 318 ||||| ||| Sbjct 1556 AGTTAAGGG 1548 >seq803190 Length=2892 Score = 134 bits (148), Expect = 2e-29 Identities = 176/244 (72%), Gaps = 16/244 (7%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAA 134 |||||||||| ||||||||||| |||||||| | | | |||| | | Sbjct 2473 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGTCATCGCTCTCA--------------A 2428 Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT 194 || | |||||| |||| ||||| |||||| | |||| | ||||| |||||| Sbjct 2427 TACCAACATAGGATCC-CGGTCCTATTGTGTTGGCCTTCAGGATCAAAGTAATAATTAAT 2369 Query 195 AGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254 ||||| |||| |||| | ||||| || | |||||| |||||||||||||||| || Sbjct 2368 AGGGAGAGTCAGGGGCATTCGTATTTCATAGATAGAGGTAAAATTCTTGGATTTATGAAA 2309 Query 255 GACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTA 314 || ||| | || |||||| || ||||||||| |||||||||||| ||| ||||||| Sbjct 2308 TACGAACAATTGTGAAAGCATTTGCCAAGGATGATTTCATTAATCA-AGAATGAAAGTTG 2250 Query 315 GGGG 318 |||| Sbjct 2249 GGGG 2246 >seq836727 Length=1481 Score = 78.8 bits (86), Expect = 2e-12 Identities = 121/169 (72%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 111 TTGCTC--GAATACATTAGCATGGAATAATAGAAT--AGGACGTGCGGTTCTATTTTGTT 166 |||||| ||||||||||||||| |||| | || | || |||| | || || | Sbjct 245 TTGCTCTAGAATACATTAGCATGAGATAACATCATTAAATAC---CGGTCTTGTTGTGCT 189 Query 167 GGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGT 226 | | | ||| | ||||||||||||| |||||||| || ||| |||| || || Sbjct 188 GACCTTTGGGATTGGAGTAATGATTAATACAGATAGTCGAGGCATTCA-TATTTCATAGT 130 Query 227 CAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 || |||||||| | |||||||||| ||| | ||| ||| |||||| || Sbjct 129 CAAAGGTGAAACTTTTGGATTTATGAAAGCCGAACAACTCCGAAAGTGT 81 >seq1752517 Length=3286 Score = 77.0 bits (84), Expect = 6e-12 Identities = 61/72 (85%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 3215 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 3274 Query 134 ATAATAGAATAG 145 |||| | |||| Sbjct 3275 ATAACATCATAG 3286 >seq746967 Length=214 Score = 77.0 bits (84), Expect = 6e-12 Identities = 61/72 (85%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 72 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 13 Query 134 ATAATAGAATAG 145 |||| | |||| Sbjct 12 ATAACATCATAG 1 >seq465880 Length=269 Score = 77.0 bits (84), Expect = 6e-12 Identities = 61/72 (85%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 198 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 257 Query 134 ATAATAGAATAG 145 |||| | |||| Sbjct 258 ATAACATCATAG 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898557820160