Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq229976 242 7e-62
seq544580 214 3e-53
seq53245 181 2e-43
seq748832 179 7e-43
seq774668 174 3e-41
seq803190 134 2e-29
seq836727 78.8 2e-12
seq1752517 77.0 6e-12
seq746967 77.0 6e-12
seq465880 77.0 6e-12
>seq229976
Length=1330
Score = 242 bits (268), Expect = 7e-62
Identities = 203/245 (83%), Gaps = 3/245 (1%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133
|||||||||| ||||||||||| |||||||| ||| | |||| | ||||||||||||||
Sbjct 356 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 415
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
|||| | |||||| | |||| ||||| |||||| | ||| || |||||||||||
Sbjct 416 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 474
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253
|||||| ||||||||| | ||||| || |||||||||||||||||||||||||| |
Sbjct 475 TAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 534
Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|||| ||| ||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 535 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 593
Query 314 AGGGG 318
||||
Sbjct 594 GGGGG 598
>seq544580
Length=248
Score = 214 bits (236), Expect = 3e-53
Identities = 187/230 (81%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| ||| | |||| | ||||||||||||
Sbjct 230 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCAT 171
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||| | | ||| ||||| |||||| | ||| || ||||||||
Sbjct 170 GGGATAACATCATAGTAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 112
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||||||||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 111 TAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 52
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300
||||| ||| || |||||||| || ||||||||||||||||||||||
Sbjct 51 GAAAGACGAACAACCGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 2
>seq53245
Length=3146
Score = 181 bits (200), Expect = 2e-43
Identities = 213/284 (75%), Gaps = 7/284 (2%)
Strand=Plus/Minus
Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99
||| ||||| || |||| || | ||| | |||||||||||||| ||||||||||| |
Sbjct 988 TGCTCTTCATTGAGTGTCGAGGTGGGCCGGCACTTTTACTTTGAACAAATTAGAGTGCTT 929
Query 100 AAAGCAGGCCT----TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155
|||||||| |||| |||| | |||||||||||| ||||||||| | ||||
Sbjct 928 CAAGCAGGCTGGATATTGCCTGAATGCTAGTGCATGGAATAATGGAATAGGACCT-CGGT 870
Query 156 TCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
|||||||||||||||| || ||| | |||||||||||| | || || |||||| |
Sbjct 869 TCTATTTTGTTGGTTTTCAGAACCAGAGGTAATGATTAATGGAGACAGGCGGGGGCATTC 810
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| || ||||||||||||||||||| ||||| || ||||||||
Sbjct 809 GTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACCGAAGCGAAAGCA 750
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|| ||||||||||| || || |||| ||||||||||||| ||
Sbjct 749 TTTGCCAAGGATGTTCTCGTTGATCA-AGAACGAAAGTTAGAGG 707
>seq748832
Length=200
Score = 179 bits (198), Expect = 7e-43
Identities = 116/126 (92%), Gaps = 1/126 (1%)
Strand=Plus/Minus
Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 200 ATAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 141
Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
||||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||
Sbjct 140 AAGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCA-AGAACGAAAGT 82
Query 313 TAGGGG 318
||||||
Sbjct 81 TAGGGG 76
>seq774668
Length=4864
Score = 174 bits (192), Expect = 3e-41
Identities = 193/249 (78%), Gaps = 9/249 (4%)
Strand=Plus/Minus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133
|||||||||| ||||||||||| || | ||| ||| | | || | ||||||||||||||
Sbjct 1792 TTACTTTGAAGAAATTAGAGTGCTCGATGCAAGCCATCGTTCTGGATACATTAGCATGGG 1733
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
|||| | ||||| | |||| ||||| ||||| | |||| || || ||||||||
Sbjct 1732 ATAAAATCGTAGGAT-TCCGGTCCTATTGTGTTGACCTTCAGGATCGAAGTGATGATTAA 1674
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGG-TGAAATTCTTGGATTTATTG 252
|||||| |||||||| ||| |||| | |||| | | | ||||||||||||||||
Sbjct 1673 TAGGGACAGTCGGGGCATTCA-TATTTCGTAGTCACAAGATAAAATTCTTGGATTTATAA 1615
Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG---TGAACGAA 309
|||||| || ||||||||||| || |||||||| ||||||||||||| |||||||
Sbjct 1614 AAGACTGACAACTGCGAAAGCATT-TGCAAGGATG-TTTCATTAATCAGGAAAGAACGAA 1557
Query 310 AGTTAGGGG 318
||||| |||
Sbjct 1556 AGTTAAGGG 1548
>seq803190
Length=2892
Score = 134 bits (148), Expect = 2e-29
Identities = 176/244 (72%), Gaps = 16/244 (7%)
Strand=Plus/Minus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAA 134
|||||||||| ||||||||||| |||||||| | | | |||| | |
Sbjct 2473 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGTCATCGCTCTCA--------------A 2428
Query 135 TAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT 194
|| | |||||| |||| ||||| |||||| | |||| | ||||| ||||||
Sbjct 2427 TACCAACATAGGATCC-CGGTCCTATTGTGTTGGCCTTCAGGATCAAAGTAATAATTAAT 2369
Query 195 AGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254
||||| |||| |||| | ||||| || | |||||| |||||||||||||||| ||
Sbjct 2368 AGGGAGAGTCAGGGGCATTCGTATTTCATAGATAGAGGTAAAATTCTTGGATTTATGAAA 2309
Query 255 GACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTA 314
|| ||| | || |||||| || ||||||||| |||||||||||| ||| |||||||
Sbjct 2308 TACGAACAATTGTGAAAGCATTTGCCAAGGATGATTTCATTAATCA-AGAATGAAAGTTG 2250
Query 315 GGGG 318
||||
Sbjct 2249 GGGG 2246
>seq836727
Length=1481
Score = 78.8 bits (86), Expect = 2e-12
Identities = 121/169 (72%), Gaps = 8/169 (5%)
Strand=Plus/Minus
Query 111 TTGCTC--GAATACATTAGCATGGAATAATAGAAT--AGGACGTGCGGTTCTATTTTGTT 166
|||||| ||||||||||||||| |||| | || | || |||| | || || |
Sbjct 245 TTGCTCTAGAATACATTAGCATGAGATAACATCATTAAATAC---CGGTCTTGTTGTGCT 189
Query 167 GGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGT 226
| | | ||| | ||||||||||||| |||||||| || ||| |||| || ||
Sbjct 188 GACCTTTGGGATTGGAGTAATGATTAATACAGATAGTCGAGGCATTCA-TATTTCATAGT 130
Query 227 CAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275
|| |||||||| | |||||||||| ||| | ||| ||| |||||| ||
Sbjct 129 CAAAGGTGAAACTTTTGGATTTATGAAAGCCGAACAACTCCGAAAGTGT 81
>seq1752517
Length=3286
Score = 77.0 bits (84), Expect = 6e-12
Identities = 61/72 (85%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133
|||||||||| ||||||||||| |||||||| ||| | |||| | ||||||||||||||
Sbjct 3215 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 3274
Query 134 ATAATAGAATAG 145
|||| | ||||
Sbjct 3275 ATAACATCATAG 3286
>seq746967
Length=214
Score = 77.0 bits (84), Expect = 6e-12
Identities = 61/72 (85%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133
|||||||||| ||||||||||| |||||||| ||| | |||| | ||||||||||||||
Sbjct 72 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 13
Query 134 ATAATAGAATAG 145
|||| | ||||
Sbjct 12 ATAACATCATAG 1
>seq465880
Length=269
Score = 77.0 bits (84), Expect = 6e-12
Identities = 61/72 (85%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133
|||||||||| ||||||||||| |||||||| ||| | |||| | ||||||||||||||
Sbjct 198 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 257
Query 134 ATAATAGAATAG 145
|||| | ||||
Sbjct 258 ATAACATCATAG 269
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 898557820160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |