Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq848487 545 9e-153 seq57086 206 1e-50 seq1654397 161 4e-37 seq958624 150 7e-34 seq36581 140 1e-30 seq1773168 95.1 5e-17 seq10984 86.0 3e-14 >seq848487 Length=632 Score = 545 bits (604), Expect = 9e-153 Identities = 475/580 (82%), Gaps = 15/580 (3%) Strand=Plus/Plus Query 113 CGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAA 172 |||||||| ||||||| |||||| ||||||||||||| |||||| ||||||||| ||||| Sbjct 1 CGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTGAAAAA 60 Query 173 GCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACC 232 | ||||||||||||||||||||||| || | | ||||| || | ||| | | Sbjct 61 GTACGTGAAATTGTTGAAAGGGAAGGGCATTTGATCAGACATGGTG--ATTTGTGCCCTC 118 Query 233 GGCCCCTCGGCCG--GTGCACTCTTCTGCGGTCA---GGCCAGCATCAGCTCGGGCGGTC 287 || ||| | | | | | ||| | ||| |||||||||||| | || || Sbjct 119 TGCTCCTTGTGGGTAGGGGAATCT-CGCATTTCACTGGGCCAGCATCAGTTTTGGTGGCA 177 Query 288 GGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGC 347 ||||||| || ||||||| || | |||| || |||||||| | || |||| | Sbjct 178 GGATAAAT-CCATAGGAATGTAGCTTGCCTCGGTAAGTATTATAGCCTGTGG--GAATAC 234 Query 348 GGCCCGCCTGGACTGAGGTCCGCGC--TCCGGCTAGGATGCTGGCGTAATGGTTGTAAGC 405 ||| || ||||||||| | ||| | | | ||||||||||| |||||||| || || Sbjct 235 TGCCAGCTGGGACTGAGGACTGCGACGTAAGTCAAGGATGCTGGCATAATGGTTATATGC 294 Query 406 GGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAA 465 |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 295 CGCCCGTCTTGAAACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAA 354 Query 466 CCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC-CGTGAG-GGTGCACCATCGACC 523 ||| | ||||||||||||||||||| |||| || || || || ||||||| ||||||| Sbjct 355 CCCATACGCGTAATGAAAGTGAACGTAGGTTGGGGCCTCGCAAGAGGTGCACAATCGACC 414 Query 524 GATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 GATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 474 Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 475 TGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTC 534 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||||||||||||| ||||||||||||||||||| Sbjct 535 TGACGTGCAAATCGATCGTCGAATTTGGGTATAGGGGCGA 574 >seq57086 Length=3907 Score = 206 bits (228), Expect = 1e-50 Identities = 219/283 (77%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| ||||||| |||| | | Sbjct 2971 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTTTGA 2912 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG--TGCACCATCG 520 |||| | | ||| || ||| ||| ||| |||| || | | || |||||| | Sbjct 2911 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCTGCACCGCTG 2855 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| |||||| | | || || || |||| ||||| |||| ||||||||||||| Sbjct 2854 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 2795 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| Sbjct 2794 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 2735 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 2734 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 2692 Score = 152 bits (168), Expect = 2e-34 Identities = 138/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| |||||||||||||||||| | || ||| |||| | | | Sbjct 3359 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAGACTCC 3300 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| |||||||||||||| ||||||| | || ||||||||| Sbjct 3299 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 3240 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||| ||| || | |||||||| | ||||||||| Sbjct 3239 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 3186 >seq1654397 Length=256 Score = 161 bits (178), Expect = 4e-37 Identities = 193/256 (75%), Gaps = 7/256 (3%) Strand=Plus/Minus Query 412 TCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAACCCGT 470 ||||| ||||||||||||||||||| |||| ||||||| |||| | ||||| | Sbjct 256 TCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGAAACCTGG 197 Query 471 GC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGA--GGGTGCACCATCGACCGATC 527 | ||| || ||| ||| ||| |||| || | | || ||||| | ||| | Sbjct 196 GATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACAGGCCGCACCGCTGGACGACC 140 Query 528 CTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA 587 ||||| | | || ||||| |||| ||| | | || |||||||||||||||||||| Sbjct 139 CTGATCTTCTGTGAAGGATTCGAGTTGGAGAACGCCAGTCGGGACCCGAAAGATGGTGAA 80 Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 |||||||||| ||| |||||||||||||||||||||||||||||| |||| | ||| | Sbjct 79 CTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGAC 20 Query 648 GTGCAAATCGATCGTC 663 |||||||||| ||||| Sbjct 19 GTGCAAATCGTTCGTC 4 >seq958624 Length=504 Score = 150 bits (166), Expect = 7e-34 Identities = 203/276 (74%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 411 GTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAACCCG 469 ||||| |||| |||||||||||| | |||| |||||| |||| | ||||| | Sbjct 333 GTCTTTAAACAAGGACCAAGGAGTTTGACATGCGGGCGAGTCGACGGGTTCTTAAACCTG 274 Query 470 TGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG-AGGGTGCACCATCGACCGATC 527 | ||| || ||| | |||| || || ||| ||| ||||| | | || | Sbjct 273 GGATGCGCAAGGAAGCT-AACG-AGCAGGAGGCCCTCATAGGCCGCACCGCTGGCTGACC 216 Query 528 CTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA 587 ||||| | | || || || |||| ||||| || | |||||||||||||||||||| Sbjct 215 CTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGTCTATCGGGACCCGAAAGATGGTGAA 156 Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 |||||||||| ||| |||||| ||||||||||| ||||||||||| |||| | ||| Sbjct 155 CTATGCCTGAGCGGGGCGAAGCCTGAGGAAACTCTCGTGGAGGCTCGAAGCGATACTGAT 96 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||| ||||| | |||||||||||||||| Sbjct 95 GTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 60 >seq36581 Length=4089 Score = 140 bits (154), Expect = 1e-30 Identities = 109/130 (84%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 2526 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGCCAGGACGAAGTCAGG 2585 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | |||||| Sbjct 2586 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAGTTGGGT 2645 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 2646 ATAGGGGCGA 2655 Score = 123 bits (136), Expect = 1e-25 Identities = 117/147 (80%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||| || ||||| ||| |||| |||||| | | ||||| ||||||| Sbjct 1788 GAGTCGGTTTGCTTGAGAGTGCAGACTTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 1847 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| |||||||||||| |||||||| |||| ||||| ||||||| |||||| | Sbjct 1848 AT-GACCACGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAA 1906 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185 |||||||| || || |||||||| || Sbjct 1907 GAGAGAGTTCAAGAGTACGTGAAACTG 1933 >seq1773168 Length=228 Score = 95.1 bits (104), Expect = 5e-17 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||| | |||||||||||||||||| | || || |||||| | | Sbjct 117 GAGGCACCGTCAACGAGTTGGGTTGTTTGGGAATGCAGCACAAATCTGGCGGTAAACTCC 58 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 || || |||||||| ||| |||||||||| ||| ||||||| |||| |||||| Sbjct 57 ATCCAAGGCTAAATACAGGCGAGAGACCGATTGCGAACAAGTACCGTGAGGGAAAGA 1 >seq10984 Length=1305 Score = 86.0 bits (94), Expect = 3e-14 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 || ||| |||| | |||||||||||||||||||| ||| | | | | |||||||||||| Sbjct 76 AGTATATATGTTAGTACCCGAAAGATGGTGAACTAAGCCCGGACAAGATGAAGCCAGAGG 17 Query 616 AAACTCTGGTGGAGG 630 ||||||||||||||| Sbjct 16 AAACTCTGGTGGAGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2040994891000