Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq512414 73.4 4e-11 >seq512414 Length=215 Score = 73.4 bits (80), Expect = 4e-11 Identities = 124/173 (72%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 10 TGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGA 69 ||||| ||||||| | | ||| ||| ||||| ||| |||| ||||| ||| |||||| Sbjct 215 TGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGA 156 Query 70 TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGA-GAT 128 | | | ||| | || |||||| |||| || ||| || |||||| || | || | | Sbjct 155 GTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCCTTTAAACTGCCTGCT 96 Query 129 ATATC-ATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||| || | || |||| || | ||| ||| |||||||||||||| |||| Sbjct 95 GAATCCATGA-GC-AGGCAAGAGAC-AACCTGGCGAACTGAAACATCTTAGTA 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468400718020