Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1811529 176 6e-42 seq879309 150 2e-34 seq747573 132 7e-29 seq478360 111 2e-22 seq586753 109 7e-22 seq960387 98.7 1e-18 seq1741434 89.7 7e-16 seq300180 86.0 9e-15 seq1789618 84.2 3e-14 seq747063 82.4 1e-13 seq792054 78.8 1e-12 seq748801 77.0 4e-12 seq739410 77.0 4e-12 seq141148 75.2 2e-11 seq949662 73.4 5e-11 seq106095 73.4 5e-11 >seq1811529 Length=469 Score = 176 bits (194), Expect = 6e-42 Identities = 195/255 (76%), Gaps = 10/255 (4%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| |||||||| || |||| | || || |||| Sbjct 327 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTC-GTGTTTGCACA 269 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||| || || || | ||| |||| |||||| | Sbjct 268 GTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGATTTCAGCTCCA 209 Query 122 C----ACGTCG-TTCACCAGCAGTGGCACC---CCTTCTCCCGAAGTTACGGGGCCATTT 173 | | |||| |||||| || | || | ||||||||||||||||||| |||||| Sbjct 208 CGAGCAAGTCGCTTCACCTACA-TATCAGCGTGCCTTCTCCCGAAGTTACGGCACCATTT 150 Query 174 TGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTG 233 |||| | |||||| ||| ||||| | | | |||||| |||||||||||||||||||||| Sbjct 149 TGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTG 90 Query 234 TGTCGGTTTACGGTA 248 ||||||||| |||| Sbjct 89 TGTCGGTTTGGGGTA 75 >seq879309 Length=873 Score = 150 bits (166), Expect = 2e-34 Identities = 182/244 (75%), Gaps = 13/244 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 324 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 266 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 265 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 208 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 207 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 157 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | ||| |||| |||||| |||||| || ||||||||||||||| Sbjct 156 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 97 Query 245 GGTA 248 |||| Sbjct 96 GGTA 93 >seq747573 Length=210 Score = 132 bits (146), Expect = 7e-29 Identities = 167/229 (73%), Gaps = 19/229 (8%) Strand=Plus/Plus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73 ||| ||||||||||||| || |||||| | ||||| | ||| || |||||||||||| Sbjct 1 CACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACCTGTGTTTT 59 Query 74 TAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCAC 133 | |||||||||||| || || |||||||| || | || Sbjct 60 TGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTT------------TTGTG--- 104 Query 134 CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACA 193 || | |||||||||||||||||||||||||||| |||||||||| ||||||| | | Sbjct 105 -AG--GCGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGA 161 Query 194 GTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 ||| | || | ||| ||||||||||||| |||||||||||||||| Sbjct 162 GTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTT 210 >seq478360 Length=228 Score = 111 bits (122), Expect = 2e-22 Identities = 159/224 (71%), Gaps = 19/224 (8%) Strand=Plus/Minus Query 25 CGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGT 84 |||||| || |||||| | ||||| | ||| || ||||||||||||| ||||||||| Sbjct 228 CGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACCTGTGTTTTTGGTAAACAGT 170 Query 85 CGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAGTGGCA 144 ||| || || |||||||| || | || || | |||| Sbjct 169 CGCCCGGGCCTGGTCACTGCGACCCCCTT------------TTGTG----AG--GGGGCA 128 Query 145 CCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAA 204 ||||||||| |||||||| ||||| |||||||||| ||||||| | |||| | || Sbjct 127 CCCCTTCTCTCGAAGTTATGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCG 68 Query 205 CGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 67 CCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 24 >seq586753 Length=219 Score = 109 bits (120), Expect = 7e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 89 GGCACCCCTTCTCCCGAAGTTACGGGGATATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 148 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 149 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 196 >seq960387 Length=202 Score = 98.7 bits (108), Expect = 1e-18 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||| || | |||| | Sbjct 191 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCNNTAGAGAGAGTTGTCT 132 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||| ||||||| ||| |||| Sbjct 131 CGCGCCCCTAGGTATTCTCTACCTACCCACTTGTGTCGATTTCGGGTA 84 >seq1741434 Length=1957 Score = 89.7 bits (98), Expect = 7e-16 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 1872 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 1931 Query 201 CGAACGCCTTAGTATTCTCTACCT 224 || | ||| ||||||||||||| Sbjct 1932 CGCGCCCCTAGGTATTCTCTACCT 1955 >seq300180 Length=2865 Score = 86.0 bits (94), Expect = 9e-15 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 82 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 23 Query 201 CGAACGCCTTAGTATTCTCTAC 222 || | ||| ||||||||||| Sbjct 22 CGCGCCCCTAGGTATTCTCTAC 1 >seq1789618 Length=288 Score = 84.2 bits (92), Expect = 3e-14 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||| |||||| |||| ||||||| ||| |||||| || |||| | Sbjct 67 GCACCCCTTCTCCCAAAGTTATGGGGTCATTTTGTCGAGTTCCTTCGACATGGTTCTCTT 126 Query 202 GA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || |||| |||||| ||||| || |||||||||| |||| |||| Sbjct 127 GACGCGCCCTAGTATATTCTACTTGTTCACCTGTGTCAGTTTGGGGTA 174 >seq747063 Length=204 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| |||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 91 CCTTCCGTCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 149 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||||||||||| Sbjct 150 TGTGTTTTTGGTAAACAGTCGC 171 >seq792054 Length=2028 Score = 78.8 bits (86), Expect = 1e-12 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||| |||||||||| |||||| ||| ||||||| | |||| | Sbjct 233 GGCACCCCTTCTCNNNNNGTTACGGGGCTATTTTGTCGAGTTCCTTAGAGAGAGTTGTCT 174 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| |||||||||||| ||| ||||||||||| |||| Sbjct 173 CGCGCCCCTATGTATTCTCTACCGACCCATTTGTGTCGGTTTCGGGTA 126 >seq748801 Length=216 Score = 77.0 bits (84), Expect = 4e-12 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 162 ACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTA 221 ||||||| |||||||||| ||||||| | |||| | || | ||| |||||||||| Sbjct 216 ACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 157 Query 222 CCTGACCACCTGTGTCGGTTTACGGTA 248 ||| |||||||||||||||| |||| Sbjct 156 CCTACCCACCTGTGTCGGTTTCGGGTA 130 >seq739410 Length=235 Score = 77.0 bits (84), Expect = 4e-12 Identities = 117/168 (70%), Gaps = 19/168 (11%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| | |||||| | ||||| | ||| || |||| Sbjct 87 CCTTCCGGCACTGGGCAGGCGTCAGCCACCATACATGGTCTTAC-GACTTTGCGGAGACC 145 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 146 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCC------------TT 193 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTT 173 | || | | |||||||||||||||||||||||||||| |||| Sbjct 194 TTGT------GAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTT 235 >seq141148 Length=1590 Score = 75.2 bits (82), Expect = 2e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 |||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 232 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTT 277 >seq949662 Length=289 Score = 73.4 bits (80), Expect = 5e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 261 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 203 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| ||||| |||||| Sbjct 202 TGTGTTTTTGGTAAATAGTCGC 181 >seq106095 Length=2938 Score = 73.4 bits (80), Expect = 5e-11 Identities = 76/100 (76%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202 ||||||||| |||||||||||||| |||||| ||| ||| | || | |||| | || Sbjct 2263 CACCCCTTCCAGCGAAGTTACGGGGCTATTTTGTCGAGTTCTTCAAAGAGAGTTACCGCG 2322 Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | || ||||||||||||| |||||| ||| ||||| Sbjct 2323 TGCCTCTGGGTATTCTCTACCTACCCACCTATGTTGGTTT 2362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682167488660