Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq1811529 176 6e-42
seq879309 150 2e-34
seq747573 132 7e-29
seq478360 111 2e-22
seq586753 109 7e-22
seq960387 98.7 1e-18
seq1741434 89.7 7e-16
seq300180 86.0 9e-15
seq1789618 84.2 3e-14
seq747063 82.4 1e-13
seq792054 78.8 1e-12
seq748801 77.0 4e-12
seq739410 77.0 4e-12
seq141148 75.2 2e-11
seq949662 73.4 5e-11
seq106095 73.4 5e-11
>seq1811529
Length=469
Score = 176 bits (194), Expect = 6e-42
Identities = 195/255 (76%), Gaps = 10/255 (4%)
Strand=Plus/Minus
Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61
||| |||||| |||||||||||||||| |||||||| || |||| | || || ||||
Sbjct 327 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTC-GTGTTTGCACA 269
Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121
| ||||||||||| |||||||| || || || | ||| |||| |||||| |
Sbjct 268 GTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGATTTCAGCTCCA 209
Query 122 C----ACGTCG-TTCACCAGCAGTGGCACC---CCTTCTCCCGAAGTTACGGGGCCATTT 173
| | |||| |||||| || | || | ||||||||||||||||||| ||||||
Sbjct 208 CGAGCAAGTCGCTTCACCTACA-TATCAGCGTGCCTTCTCCCGAAGTTACGGCACCATTT 150
Query 174 TGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTG 233
|||| | |||||| ||| ||||| | | | |||||| ||||||||||||||||||||||
Sbjct 149 TGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTG 90
Query 234 TGTCGGTTTACGGTA 248
||||||||| ||||
Sbjct 89 TGTCGGTTTGGGGTA 75
>seq879309
Length=873
Score = 150 bits (166), Expect = 2e-34
Identities = 182/244 (75%), Gaps = 13/244 (5%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 324 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 266
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 265 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 208
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 207 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 157
Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244
| || |||| | ||| |||| |||||| |||||| || |||||||||||||||
Sbjct 156 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 97
Query 245 GGTA 248
||||
Sbjct 96 GGTA 93
>seq747573
Length=210
Score = 132 bits (146), Expect = 7e-29
Identities = 167/229 (73%), Gaps = 19/229 (8%)
Strand=Plus/Plus
Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73
||| ||||||||||||| || |||||| | ||||| | ||| || ||||||||||||
Sbjct 1 CACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACCTGTGTTTT 59
Query 74 TAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCAC 133
| |||||||||||| || || |||||||| || | ||
Sbjct 60 TGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTT------------TTGTG--- 104
Query 134 CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACA 193
|| | |||||||||||||||||||||||||||| |||||||||| ||||||| | |
Sbjct 105 -AG--GCGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGA 161
Query 194 GTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
||| | || | ||| ||||||||||||| ||||||||||||||||
Sbjct 162 GTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTT 210
>seq478360
Length=228
Score = 111 bits (122), Expect = 2e-22
Identities = 159/224 (71%), Gaps = 19/224 (8%)
Strand=Plus/Minus
Query 25 CGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGT 84
|||||| || |||||| | ||||| | ||| || ||||||||||||| |||||||||
Sbjct 228 CGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACCTGTGTTTTTGGTAAACAGT 170
Query 85 CGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAGTGGCA 144
||| || || |||||||| || | || || | ||||
Sbjct 169 CGCCCGGGCCTGGTCACTGCGACCCCCTT------------TTGTG----AG--GGGGCA 128
Query 145 CCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAA 204
||||||||| |||||||| ||||| |||||||||| ||||||| | |||| | ||
Sbjct 127 CCCCTTCTCTCGAAGTTATGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCG 68
Query 205 CGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 67 CCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 24
>seq586753
Length=219
Score = 109 bits (120), Expect = 7e-22
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 89 GGCACCCCTTCTCCCGAAGTTACGGGGATATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 148
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 149 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 196
>seq960387
Length=202
Score = 98.7 bits (108), Expect = 1e-18
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| ||| || | |||| |
Sbjct 191 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCNNTAGAGAGAGTTGTCT 132
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| |||| ||||||| ||| ||||
Sbjct 131 CGCGCCCCTAGGTATTCTCTACCTACCCACTTGTGTCGATTTCGGGTA 84
>seq1741434
Length=1957
Score = 89.7 bits (98), Expect = 7e-16
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 1872 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 1931
Query 201 CGAACGCCTTAGTATTCTCTACCT 224
|| | ||| |||||||||||||
Sbjct 1932 CGCGCCCCTAGGTATTCTCTACCT 1955
>seq300180
Length=2865
Score = 86.0 bits (94), Expect = 9e-15
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 82 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 23
Query 201 CGAACGCCTTAGTATTCTCTAC 222
|| | ||| |||||||||||
Sbjct 22 CGCGCCCCTAGGTATTCTCTAC 1
>seq1789618
Length=288
Score = 84.2 bits (92), Expect = 3e-14
Identities = 84/108 (78%), Gaps = 1/108 (1%)
Strand=Plus/Plus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
|||||||||||||| |||||| |||| ||||||| ||| |||||| || |||| |
Sbjct 67 GCACCCCTTCTCCCAAAGTTATGGGGTCATTTTGTCGAGTTCCTTCGACATGGTTCTCTT 126
Query 202 GA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| |||| |||||| ||||| || |||||||||| |||| ||||
Sbjct 127 GACGCGCCCTAGTATATTCTACTTGTTCACCTGTGTCAGTTTGGGGTA 174
>seq747063
Length=204
Score = 82.4 bits (90), Expect = 1e-13
Identities = 68/82 (83%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| |||| ||||||||||||| || |||||| | |||| || ||| || ||||
Sbjct 91 CCTTCCGTCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 149
Query 66 TGTGTTTTTAGTAAACAGTCGC 87
||||||||| ||||||||||||
Sbjct 150 TGTGTTTTTGGTAAACAGTCGC 171
>seq792054
Length=2028
Score = 78.8 bits (86), Expect = 1e-12
Identities = 81/108 (75%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||| |||||||||| |||||| ||| ||||||| | |||| |
Sbjct 233 GGCACCCCTTCTCNNNNNGTTACGGGGCTATTTTGTCGAGTTCCTTAGAGAGAGTTGTCT 174
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| |||||||||||| ||| ||||||||||| ||||
Sbjct 173 CGCGCCCCTATGTATTCTCTACCGACCCATTTGTGTCGGTTTCGGGTA 126
>seq748801
Length=216
Score = 77.0 bits (84), Expect = 4e-12
Identities = 69/87 (79%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 162 ACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTA 221
||||||| |||||||||| ||||||| | |||| | || | ||| ||||||||||
Sbjct 216 ACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTA 157
Query 222 CCTGACCACCTGTGTCGGTTTACGGTA 248
||| |||||||||||||||| ||||
Sbjct 156 CCTACCCACCTGTGTCGGTTTCGGGTA 130
>seq739410
Length=235
Score = 77.0 bits (84), Expect = 4e-12
Identities = 117/168 (70%), Gaps = 19/168 (11%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| | |||||| | ||||| | ||| || ||||
Sbjct 87 CCTTCCGGCACTGGGCAGGCGTCAGCCACCATACATGGTCTTAC-GACTTTGCGGAGACC 145
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 146 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCC------------TT 193
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTT 173
| || | | |||||||||||||||||||||||||||| ||||
Sbjct 194 TTGT------GAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTT 235
>seq141148
Length=1590
Score = 75.2 bits (82), Expect = 2e-11
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186
|||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 232 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTT 277
>seq949662
Length=289
Score = 73.4 bits (80), Expect = 5e-11
Identities = 66/82 (80%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | |||| || ||| || ||||
Sbjct 261 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 203
Query 66 TGTGTTTTTAGTAAACAGTCGC 87
||||||||| ||||| ||||||
Sbjct 202 TGTGTTTTTGGTAAATAGTCGC 181
>seq106095
Length=2938
Score = 73.4 bits (80), Expect = 5e-11
Identities = 76/100 (76%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 143 CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCG 202
||||||||| |||||||||||||| |||||| ||| ||| | || | |||| | ||
Sbjct 2263 CACCCCTTCCAGCGAAGTTACGGGGCTATTTTGTCGAGTTCTTCAAAGAGAGTTACCGCG 2322
Query 203 AACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
| || ||||||||||||| |||||| ||| |||||
Sbjct 2323 TGCCTCTGGGTATTCTCTACCTACCCACCTATGTTGGTTT 2362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 682167488660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |