Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq747573 91.5 2e-16 seq586753 91.5 2e-16 seq1811529 82.4 8e-14 seq478360 82.4 8e-14 seq879309 75.2 1e-11 seq141148 75.2 1e-11 seq739410 73.4 4e-11 >seq747573 Length=210 Score = 91.5 bits (100), Expect = 2e-16 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | || ||| || Sbjct 155 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCGCCTCACAAAAGG 96 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 95 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 47 >seq586753 Length=219 Score = 91.5 bits (100), Expect = 2e-16 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | || ||| || Sbjct 135 TAAGGAACTCGGCAAAATATCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 76 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 75 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 27 >seq1811529 Length=469 Score = 82.4 bits (90), Expect = 8e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || ||| ||| || |||| |||||||||||| ||| ||| ||| Sbjct 80 CAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAG 139 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 |||||||||||| || | |||||||||||| || Sbjct 140 GAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAA 174 >seq478360 Length=228 Score = 82.4 bits (90), Expect = 8e-14 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||| || || |||| || | || ||| || Sbjct 85 TAAGGAACTCGGCAAAATAGCCCCATAACTTCGAGAGAAGGGGTGCCCCCTCACAAAAGG 144 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 145 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 193 >seq879309 Length=873 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTT-GAGTGAATCACGGTTAA 82 ||||| |||||| || | || || ||||||| ||||| | ||| ||| || | || Sbjct 98 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAA 157 Query 83 GGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 |||||| |||||| |||||| |||||||||||| || |||| Sbjct 158 GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 198 >seq141148 Length=1590 Score = 75.2 bits (82), Expect = 1e-11 Identities = 87/116 (75%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGG 140 |||||||| |||||| | ||| |||||||||||| || |||| || || ||| ||| Sbjct 277 AAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCATCACAAAAGGG 218 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || || || || ||| || || |||||||| |||||||| ||| || ||| || Sbjct 217 -GGTCGTAGTGACCAGGCCCGGGTGACTGTTTACCAAAAACATAGGTCTCTGCAAA 163 >seq739410 Length=235 Score = 73.4 bits (80), Expect = 4e-11 Identities = 71/90 (79%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 100 CCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCGCAGAGAATAGGTC 159 ||| |||||||||||| || |||| || | || ||| ||| || ||||| || ||| | Sbjct 229 CCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGGG-GGTCGCAGTGACCAGGCC 171 Query 160 CAGGCAACTGTTTAACAAAAACACAGGGCT 189 | ||| |||||||| |||||||||||| || Sbjct 170 CGGGCGACTGTTTACCAAAAACACAGGTCT 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521842410680