Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq747573 91.5 2e-16
seq586753 91.5 2e-16
seq1811529 82.4 8e-14
seq478360 82.4 8e-14
seq879309 75.2 1e-11
seq141148 75.2 1e-11
seq739410 73.4 4e-11
>seq747573
Length=210
Score = 91.5 bits (100), Expect = 2e-16
Identities = 87/110 (79%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| || | || ||| ||
Sbjct 155 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCGCCTCACAAAAGG 96
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 95 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 47
>seq586753
Length=219
Score = 91.5 bits (100), Expect = 2e-16
Identities = 87/110 (79%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| || | || ||| ||
Sbjct 135 TAAGGAACTCGGCAAAATATCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 76
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 75 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 27
>seq1811529
Length=469
Score = 82.4 bits (90), Expect = 8e-14
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || ||| ||| || |||| |||||||||||| ||| ||| |||
Sbjct 80 CAAACCGACACAGGTGGTCAGGTAGAGAATACCAAGGCGCTTGAGAGAACTCGGGTGAAG 139
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118
|||||||||||| || | |||||||||||| ||
Sbjct 140 GAACTAGGCAAAATGGTGCCGTAACTTCGGGAGAA 174
>seq478360
Length=228
Score = 82.4 bits (90), Expect = 8e-14
Identities = 85/110 (77%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||| || || |||| || | || ||| ||
Sbjct 85 TAAGGAACTCGGCAAAATAGCCCCATAACTTCGAGAGAAGGGGTGCCCCCTCACAAAAGG 144
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 145 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 193
>seq879309
Length=873
Score = 75.2 bits (82), Expect = 1e-11
Identities = 78/101 (77%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTT-GAGTGAATCACGGTTAA 82
||||| |||||| || | || || ||||||| ||||| | ||| ||| || | ||
Sbjct 98 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAA 157
Query 83 GGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
|||||| |||||| |||||| |||||||||||| || ||||
Sbjct 158 GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 198
>seq141148
Length=1590
Score = 75.2 bits (82), Expect = 1e-11
Identities = 87/116 (75%), Gaps = 1/116 (1%)
Strand=Plus/Minus
Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGG 140
|||||||| |||||| | ||| |||||||||||| || |||| || || ||| |||
Sbjct 277 AAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCATCACAAAAGGG 218
Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
|| || || || ||| || || |||||||| |||||||| ||| || ||| ||
Sbjct 217 -GGTCGTAGTGACCAGGCCCGGGTGACTGTTTACCAAAAACATAGGTCTCTGCAAA 163
>seq739410
Length=235
Score = 73.4 bits (80), Expect = 4e-11
Identities = 71/90 (79%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 100 CCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCGCAGAGAATAGGTC 159
||| |||||||||||| || |||| || | || ||| ||| || ||||| || ||| |
Sbjct 229 CCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGGG-GGTCGCAGTGACCAGGCC 171
Query 160 CAGGCAACTGTTTAACAAAAACACAGGGCT 189
| ||| |||||||| |||||||||||| ||
Sbjct 170 CGGGCGACTGTTTACCAAAAACACAGGTCT 141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521842410680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |