Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1811529 178 1e-42 seq879309 91.5 1e-16 seq949662 84.2 2e-14 seq747063 84.2 2e-14 seq739410 84.2 2e-14 seq57130 75.2 1e-11 >seq1811529 Length=469 Score = 178 bits (196), Expect = 1e-42 Identities = 122/138 (88%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 21 AGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATT 80 || ||||||||| |||| | | |||||||||||||| ||||| |||||||||| Sbjct 196 AGCGACTTGCTCGTGGAGCTGAAATCAGTCGAAGATACCAGCTGGCTGCAACTGTTTATT 255 Query 81 AAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTG 140 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 256 AAAAACACAGCACTGTGCAAACACGAAAGTGGACGTATACGGTGTGACGCCTGCCCGGTG 315 Query 141 CCGGAAGGTTAATTGATG 158 |||||||||||||||||| Sbjct 316 CCGGAAGGTTAATTGATG 333 >seq879309 Length=873 Score = 91.5 bits (100), Expect = 1e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 231 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 290 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 291 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 325 >seq949662 Length=289 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| |||||| |||| |||||||||| ||| ||||| || Sbjct 160 GGTCGTAGTGACCAGGCCCGGGCGACTATTTACCAAAAACACAGGTCTCCGCAAAGTCGT 219 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 220 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 265 >seq747063 Length=204 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 192 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 133 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| ||| |||||||| || Sbjct 132 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGACGGAAGGTCAA 87 >seq739410 Length=235 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 188 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 129 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| | | |||||||||||| |||||||||||| || Sbjct 128 AAGACCATGTATGGTGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 83 >seq57130 Length=3464 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/101 (76%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 13 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 72 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAG 147 ||| | |||| ||| ||||||||||| ||||| |||| Sbjct 73 AAGACCATGTATGGGGGCTGACGCCTGCCTAGTGCCAGAAG 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468400718020