Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq1811529 178 1e-42
seq879309 91.5 1e-16
seq949662 84.2 2e-14
seq747063 84.2 2e-14
seq739410 84.2 2e-14
seq57130 75.2 1e-11
>seq1811529
Length=469
Score = 178 bits (196), Expect = 1e-42
Identities = 122/138 (88%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 21 AGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATT 80
|| ||||||||| |||| | | |||||||||||||| ||||| ||||||||||
Sbjct 196 AGCGACTTGCTCGTGGAGCTGAAATCAGTCGAAGATACCAGCTGGCTGCAACTGTTTATT 255
Query 81 AAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTG 140
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 256 AAAAACACAGCACTGTGCAAACACGAAAGTGGACGTATACGGTGTGACGCCTGCCCGGTG 315
Query 141 CCGGAAGGTTAATTGATG 158
||||||||||||||||||
Sbjct 316 CCGGAAGGTTAATTGATG 333
>seq879309
Length=873
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 231 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 290
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 291 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 325
>seq949662
Length=289
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| |||||| |||| |||||||||| ||| ||||| ||
Sbjct 160 GGTCGTAGTGACCAGGCCCGGGCGACTATTTACCAAAAACACAGGTCTCCGCAAAGTCGT 219
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 220 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 265
>seq747063
Length=204
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 192 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 133
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| ||| |||||||| ||
Sbjct 132 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGACGGAAGGTCAA 87
>seq739410
Length=235
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 188 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 129
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| | | |||||||||||| |||||||||||| ||
Sbjct 128 AAGACCATGTATGGTGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 83
>seq57130
Length=3464
Score = 75.2 bits (82), Expect = 1e-11
Identities = 77/101 (76%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 13 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 72
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAG 147
||| | |||| ||| ||||||||||| ||||| ||||
Sbjct 73 AAGACCATGTATGGGGGCTGACGCCTGCCTAGTGCCAGAAG 113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468400718020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |