Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq229976 300 2e-79
seq53245 241 2e-61
seq506662 237 2e-60
seq121707 219 7e-55
seq1124789 187 4e-45
seq651854 178 2e-42
seq647521 176 7e-42
seq1757942 156 7e-36
seq837785 141 1e-31
seq579307 140 5e-31
seq501782 140 5e-31
seq536982 138 2e-30
seq1741358 134 2e-29
seq778675 114 2e-23
seq598765 95.1 2e-17
seq134688 89.7 8e-16
>seq229976
Length=1330
Score = 300 bits (332), Expect = 2e-79
Identities = 224/260 (86%), Gaps = 2/260 (1%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| || | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1044
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||| | | || | | | |||||||||||||||||| |||
Sbjct 1043 ACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGC 984
Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
| | || | || |||| |||||||| | ||||||||||||||| ||||||
Sbjct 983 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 924
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 864
Query 239 GAAAGAGCTATCAATCTGTC 258
||||||||| ||| ||||||
Sbjct 863 GAAAGAGCTCTCAGTCTGTC 844
>seq53245
Length=3146
Score = 241 bits (266), Expect = 2e-61
Identities = 211/260 (81%), Gaps = 16/260 (6%)
Strand=Plus/Plus
Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 CCTTCATTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 262
Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----------CCAGC- 120
|||| || | |||| |||||| |||||||||||||| || ||
Sbjct 263 -TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTCTTCGCCGGCT 320
Query 121 -CACCAACCATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
|| ||| || || | | ||| |||||||| || |||||||||||||||| |||
Sbjct 321 GCAACAAAGGAAGCCGGAAACGACTAGTTAGCAGGCTAGAGTCTCGTTCGTTATCGCAAT 380
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 381 TAAGCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAA 440
Query 239 GAAAGAGCTATCAATCTGTC 258
||||||||| ||||||||||
Sbjct 441 GAAAGAGCTCTCAATCTGTC 460
>seq506662
Length=231
Score = 237 bits (262), Expect = 2e-60
Identities = 184/224 (82%), Gaps = 2/224 (1%)
Strand=Plus/Minus
Query 37 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC 96
|||||||||||||||||||||||||||||||||||||||||||||| | | || | |
Sbjct 231 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCTGTGGCCTAAATGG 172
Query 97 CAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGG--GCTATTTAGCAGGT 154
| |||||||||||||||||| || | |||| ||||||||
Sbjct 171 CCATAGTCCCTCTAAGAAGCTAGNNNNNNNNNNNNNNNNNNGCATAGCTAGTTAGCAGGC 112
Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214
| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||
Sbjct 111 TGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGACC 52
Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 51 ATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 8
>seq121707
Length=5994
Score = 219 bits (242), Expect = 7e-55
Identities = 187/228 (82%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| || | | |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 707 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCAGTCCAGAACATCTAAGGGCATCACAG 648
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||||||||||||||||||| || | | || | | |||||||||||||||||| |||
Sbjct 647 ACCTGTTATTGCCTCAAACTACCGTCGCCTAAATAGCGATAGTCCCTCTAAGAAGCTAGC 588
Query 121 CAC-CAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
| | || | || || | |||||||| | ||||| ||||||||| ||||||
Sbjct 587 TGCGGAGGGATGGCTCCGCATAGCCAGTTAGCAGGATGAGGTCACGTTCGTTAACGGAAT 528
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226
|||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 527 TAACCAGACAAATCGCTCCACCAATTAAGAACGGCCATGCACCACCAC 480
>seq1124789
Length=241
Score = 187 bits (206), Expect = 4e-45
Identities = 163/200 (82%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||| | | || | | | |||||||||||||||||| |||
Sbjct 241 ACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGC 182
Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
| | || | || |||| |||||||| | |||||| |||| ||| |||||
Sbjct 181 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTTGTTCATTAATGGAAT 122
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 121 TAACCAGACAAATCGCTCCACCAACTAAGAACGACCATGCACCACCACCCATAAAATCAA 62
Query 239 GAAAGAGCTATCAATCTGTC 258
||||||||| ||| ||| ||
Sbjct 61 GAAAGAGCTCTCAGTCTATC 42
>seq651854
Length=216
Score = 178 bits (196), Expect = 2e-42
Identities = 110/118 (93%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200
|||| |||||||| | ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 176 GCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACC 117
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 116 AACTAAGAACGTCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 59
>seq647521
Length=200
Score = 176 bits (194), Expect = 7e-42
Identities = 149/181 (82%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| || | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 79
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
|||||||||||||||||| |||||| |||| | | | |||||||||||||||||| |||
Sbjct 80 ACCTGTTATTGCCTCAAAGTTCCATCGGCTAAACGGCGATAGTCCCTCTAAGAAGCTAGC 139
Query 121 CAC-CAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
| | || | || |||| |||||||| | ||||||||||||||| ||||||
Sbjct 140 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 199
Query 179 T 179
|
Sbjct 200 T 200
>seq1757942
Length=1440
Score = 156 bits (172), Expect = 7e-36
Identities = 97/104 (93%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200
|||| |||||||| | ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1400 GCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACT 1341
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1340 AACTAAGAACGGCCATGCGCCACCACCCATAGAATCAAGAAAGA 1297
>seq837785
Length=672
Score = 141 bits (156), Expect = 1e-31
Identities = 102/118 (86%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62
|||| || | | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 125 CTCGTTGAATACATCAGTGTAGCGCGCGTATGGCCCAGAACATCTAAGGGCATCACAGAC 66
Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||| | | || | | | |||||||||||||||||| |||
Sbjct 65 CTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 8
>seq579307
Length=212
Score = 140 bits (154), Expect = 5e-31
Identities = 103/120 (86%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| || | | ||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 143 TACTCGTTGAATACATCAGTGTAGTGAGCATGCGGCCCAGAACATCTAAGGGCATCACAG 84
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||| | | || | | | |||||||||||||||||| |||
Sbjct 83 ACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGC 24
>seq501782
Length=227
Score = 140 bits (154), Expect = 5e-31
Identities = 103/120 (86%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| || | | ||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 144 TACTCGTTGAATACATCAGTGTAGTGCGTGTGCAGCCCAGAACATCTAAGGGCATCACAG 85
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||| | | || | | | |||||||||||||||||| |||
Sbjct 84 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 25
>seq536982
Length=202
Score = 138 bits (152), Expect = 2e-30
Identities = 102/119 (86%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| || | | ||||| ||||||||||||| |||||||||||||||||||||| ||
Sbjct 84 TACTCGTTGAATACATCAGTATAGCGCGCGTGCGACCCAGAACATCTAAGGGCATCATAG 143
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119
||||||||||||||||||||||| | | || | | | |||||||||||||||||| ||
Sbjct 144 ACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAG 202
>seq1741358
Length=230
Score = 134 bits (148), Expect = 2e-29
Identities = 77/79 (97%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 79 ACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGNACATCTAAGGGCATCACAGA 20
Query 62 CCTGTTATTGCCTCAAACT 80
|||||||||||||||||||
Sbjct 19 CCTGTTATTGCCTCAAACT 1
>seq778675
Length=5282
Score = 114 bits (126), Expect = 2e-23
Identities = 96/118 (81%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| ||| |||| ||||||||||| | ||||||||||| || |||| ||||| ||
Sbjct 4042 CTAGTTAACAGGCCGAGGTCTCGTTCACAAATGGAATTAACCAAACGAATCGCTCCATCA 4101
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCC 259
||||||||||| |||||| || || |||||||||||||||||| || || |||||||
Sbjct 4102 ACTAAGAACGGTCATGCATCATCATCCATAGAATCAAGAAAGAACTCTCGGTCTGTCC 4159
>seq598765
Length=203
Score = 95.1 bits (104), Expect = 2e-17
Identities = 101/131 (77%), Gaps = 2/131 (2%)
Strand=Plus/Minus
Query 54 ATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGA 113
|||||||||||||||||||||||||||| | | || | | | |||||||||||||||
Sbjct 131 ATCACAGACCTGTTATTGCCTCAAACTTTTGTGGCCTAAACGGCCATAGTCCCTCTAAGA 72
Query 114 AGCCAGCCAC-CAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 171
||| ||| | | || | || |||| |||||||| | |||||||||||||||
Sbjct 71 AGCTAGCTGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTA 12
Query 172 TCGGAATTAAC 182
||||||||||
Sbjct 11 ACGGAATTAAC 1
>seq134688
Length=432
Score = 89.7 bits (98), Expect = 8e-16
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72
|||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 278 TCAGTGTAGCACGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 782763616020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |