Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq229976 300 2e-79 seq53245 241 2e-61 seq506662 237 2e-60 seq121707 219 7e-55 seq1124789 187 4e-45 seq651854 178 2e-42 seq647521 176 7e-42 seq1757942 156 7e-36 seq837785 141 1e-31 seq579307 140 5e-31 seq501782 140 5e-31 seq536982 138 2e-30 seq1741358 134 2e-29 seq778675 114 2e-23 seq598765 95.1 2e-17 seq134688 89.7 8e-16 >seq229976 Length=1330 Score = 300 bits (332), Expect = 2e-79 Identities = 224/260 (86%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1103 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1044 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 1043 ACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGC 984 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || | || |||| |||||||| | ||||||||||||||| |||||| Sbjct 983 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 924 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 923 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 864 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 863 GAAAGAGCTCTCAGTCTGTC 844 >seq53245 Length=3146 Score = 241 bits (266), Expect = 2e-61 Identities = 211/260 (81%), Gaps = 16/260 (6%) Strand=Plus/Plus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 203 CCTTCATTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 262 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-----------CCAGC- 120 |||| || | |||| |||||| |||||||||||||| || || Sbjct 263 -TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTCTTCGCCGGCT 320 Query 121 -CACCAACCATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || ||| || || | | ||| |||||||| || |||||||||||||||| ||| Sbjct 321 GCAACAAAGGAAGCCGGAAACGACTAGTTAGCAGGCTAGAGTCTCGTTCGTTATCGCAAT 380 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 381 TAAGCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAA 440 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 441 GAAAGAGCTCTCAATCTGTC 460 >seq506662 Length=231 Score = 237 bits (262), Expect = 2e-60 Identities = 184/224 (82%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 37 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC 96 |||||||||||||||||||||||||||||||||||||||||||||| | | || | | Sbjct 231 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCTGTGGCCTAAATGG 172 Query 97 CAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGG--GCTATTTAGCAGGT 154 | |||||||||||||||||| || | |||| |||||||| Sbjct 171 CCATAGTCCCTCTAAGAAGCTAGNNNNNNNNNNNNNNNNNNGCATAGCTAGTTAGCAGGC 112 Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214 | ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || Sbjct 111 TGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGACC 52 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 51 ATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 8 >seq121707 Length=5994 Score = 219 bits (242), Expect = 7e-55 Identities = 187/228 (82%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | |||||||||||||||||| | |||||||||||||||||||||||| Sbjct 707 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCAGTCCAGAACATCTAAGGGCATCACAG 648 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||||||||||| || | | || | | |||||||||||||||||| ||| Sbjct 647 ACCTGTTATTGCCTCAAACTACCGTCGCCTAAATAGCGATAGTCCCTCTAAGAAGCTAGC 588 Query 121 CAC-CAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || | || || | |||||||| | ||||| ||||||||| |||||| Sbjct 587 TGCGGAGGGATGGCTCCGCATAGCCAGTTAGCAGGATGAGGTCACGTTCGTTAACGGAAT 528 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 |||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 527 TAACCAGACAAATCGCTCCACCAATTAAGAACGGCCATGCACCACCAC 480 >seq1124789 Length=241 Score = 187 bits (206), Expect = 4e-45 Identities = 163/200 (82%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 241 ACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGC 182 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || | || |||| |||||||| | |||||| |||| ||| ||||| Sbjct 181 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTTGTTCATTAATGGAAT 122 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 121 TAACCAGACAAATCGCTCCACCAACTAAGAACGACCATGCACCACCACCCATAAAATCAA 62 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| ||| || Sbjct 61 GAAAGAGCTCTCAGTCTATC 42 >seq651854 Length=216 Score = 178 bits (196), Expect = 2e-42 Identities = 110/118 (93%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| | ||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 176 GCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACC 117 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 116 AACTAAGAACGTCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 59 >seq647521 Length=200 Score = 176 bits (194), Expect = 7e-42 Identities = 149/181 (82%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 79 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||||||||| |||||| |||| | | | |||||||||||||||||| ||| Sbjct 80 ACCTGTTATTGCCTCAAAGTTCCATCGGCTAAACGGCGATAGTCCCTCTAAGAAGCTAGC 139 Query 121 CAC-CAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || | || |||| |||||||| | ||||||||||||||| |||||| Sbjct 140 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 199 Query 179 T 179 | Sbjct 200 T 200 >seq1757942 Length=1440 Score = 156 bits (172), Expect = 7e-36 Identities = 97/104 (93%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| | ||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1400 GCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACT 1341 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1340 AACTAAGAACGGCCATGCGCCACCACCCATAGAATCAAGAAAGA 1297 >seq837785 Length=672 Score = 141 bits (156), Expect = 1e-31 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| || | | |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 125 CTCGTTGAATACATCAGTGTAGCGCGCGTATGGCCCAGAACATCTAAGGGCATCACAGAC 66 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 65 CTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 8 >seq579307 Length=212 Score = 140 bits (154), Expect = 5e-31 Identities = 103/120 (86%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||| | || |||||||||||||||||||||||||||||| Sbjct 143 TACTCGTTGAATACATCAGTGTAGTGAGCATGCGGCCCAGAACATCTAAGGGCATCACAG 84 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 83 ACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGC 24 >seq501782 Length=227 Score = 140 bits (154), Expect = 5e-31 Identities = 103/120 (86%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||| ||| |||| |||||||||||||||||||||||||| Sbjct 144 TACTCGTTGAATACATCAGTGTAGTGCGTGTGCAGCCCAGAACATCTAAGGGCATCACAG 85 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 84 ACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAGC 25 >seq536982 Length=202 Score = 138 bits (152), Expect = 2e-30 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||| ||||||||||||| |||||||||||||||||||||| || Sbjct 84 TACTCGTTGAATACATCAGTATAGCGCGCGTGCGACCCAGAACATCTAAGGGCATCATAG 143 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||||||||||||||| | | || | | | |||||||||||||||||| || Sbjct 144 ACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAG 202 >seq1741358 Length=230 Score = 134 bits (148), Expect = 2e-29 Identities = 77/79 (97%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 79 ACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGNACATCTAAGGGCATCACAGA 20 Query 62 CCTGTTATTGCCTCAAACT 80 ||||||||||||||||||| Sbjct 19 CCTGTTATTGCCTCAAACT 1 >seq778675 Length=5282 Score = 114 bits (126), Expect = 2e-23 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| ||| |||| ||||||||||| | ||||||||||| || |||| ||||| || Sbjct 4042 CTAGTTAACAGGCCGAGGTCTCGTTCACAAATGGAATTAACCAAACGAATCGCTCCATCA 4101 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCC 259 ||||||||||| |||||| || || |||||||||||||||||| || || ||||||| Sbjct 4102 ACTAAGAACGGTCATGCATCATCATCCATAGAATCAAGAAAGAACTCTCGGTCTGTCC 4159 >seq598765 Length=203 Score = 95.1 bits (104), Expect = 2e-17 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 54 ATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGA 113 |||||||||||||||||||||||||||| | | || | | | ||||||||||||||| Sbjct 131 ATCACAGACCTGTTATTGCCTCAAACTTTTGTGGCCTAAACGGCCATAGTCCCTCTAAGA 72 Query 114 AGCCAGCCAC-CAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 171 ||| ||| | | || | || |||| |||||||| | ||||||||||||||| Sbjct 71 AGCTAGCTGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTA 12 Query 172 TCGGAATTAAC 182 |||||||||| Sbjct 11 ACGGAATTAAC 1 >seq134688 Length=432 Score = 89.7 bits (98), Expect = 8e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 278 TCAGTGTAGCACGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 782763616020