Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq57086 394 2e-107 seq44805 325 7e-87 seq535033 230 4e-58 seq1344519 214 3e-53 seq436146 214 3e-53 seq1702297 205 2e-50 seq848493 199 7e-49 seq756298 174 3e-41 seq1637101 156 7e-36 seq799383 150 3e-34 seq1794730 149 1e-33 seq1786476 143 4e-32 seq736425 138 2e-30 seq372682 136 7e-30 seq787643 107 3e-21 seq13889 87.8 3e-15 seq57130 73.4 7e-11 >seq57086 Length=3907 Score = 394 bits (436), Expect = 2e-107 Identities = 264/293 (90%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | | || |||||||||||||||||||||||||||||| Sbjct 583 TACTAGGTTGAATTACTATCGCGAC-ACTTTCATCAGTAGGGTAAAACTAACCTGTCTCA 641 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 642 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 701 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 761 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 762 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 821 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||| | ||| | |||||||||||||||||||| |||||| |||| |||||| Sbjct 822 CAAACTCCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 874 >seq44805 Length=2456 Score = 325 bits (360), Expect = 7e-87 Identities = 225/253 (89%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1592 GTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 1651 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| | ||||||||||||| |||||| ||||||||||||| |||||||||||||||| Sbjct 1652 ATTTGCGGGTGAACAATCCGACGCTTGGCGAATTCTGCTTCACAATGATAGGAAGAGCCG 1711 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 1712 ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATC 1771 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGAT 267 |||||||||| ||||||| ||||||| || ||| ||| | | | ||||||||||| Sbjct 1772 CCTGTGGTAATTTTTCTGACACCTCTTGCTGAAAACTCTTCAA--GCCAAAAGGATCGAT 1829 Query 268 AGGCCACACTTTC 280 ||||| ||||| Sbjct 1830 AGGCCTTGCTTTC 1842 >seq535033 Length=218 Score = 230 bits (254), Expect = 4e-58 Identities = 159/179 (89%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | | || ||||||||||||||||||||||||||||||| Sbjct 178 TACTAGGTTGAATTACTATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 120 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||| |||||||| ||||||||||||| |||| ||| || Sbjct 119 CGACGGTCTAAACCCAGCTCACGGTCCCTATTGGTGGGTGAACAATTCAACACTTGGTGA 60 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 1 >seq1344519 Length=274 Score = 214 bits (236), Expect = 3e-53 Identities = 149/168 (89%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || ||| |||||||||||||||||||||||||||||||||| Sbjct 108 TACTAGGTTGAATTACTATCATGGC-ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 166 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || ||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 167 CGATAGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 226 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 227 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 274 >seq436146 Length=207 Score = 214 bits (236), Expect = 3e-53 Identities = 149/168 (89%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | ||| |||||||||||||||||||||||||||||||||| Sbjct 167 TACTAGGTTGAATTACTATCGCGGC-ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 109 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | ||||||||||||||| |||||||||||| |||||||||||||||||| ||| || Sbjct 108 CGGCGGTCTAAACCCAGCAGACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 49 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 48 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 1 >seq1702297 Length=267 Score = 205 bits (226), Expect = 2e-50 Identities = 147/168 (88%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||| || | ||| ||||||||||||||||||||||||||||| |||| Sbjct 101 TACTAGGTTGAATTATTATCGTGGC-ACGGTCATCAGTAGGGTAAAACTAACCTGACTCA 159 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | |||||||||||||||||||||| ||||| |||||||||||||||||| ||| || Sbjct 160 CAATGGTCTAAACCCAGCTCACGTTCTCTATTGGTGGGTGAACAATCCAACACTTGGTGA 219 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 220 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 267 >seq848493 Length=409 Score = 199 bits (220), Expect = 7e-49 Identities = 131/151 (87%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 350 Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264 ||||||||||||||||||||||| ||||||||| |||||||| Sbjct 349 TTATCCCTGTGGTAACTTTTCTGACACCTCTAGNNNNNNNNNNNNNNNNNNNAAAGGATC 290 Query 265 GATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||||||||||||||||||||||||||||| Sbjct 289 GATAGGCCACACTTTCATGGTTTGTATTCAC 259 >seq756298 Length=11729 Score = 174 bits (192), Expect = 3e-41 Identities = 136/161 (84%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 67 TCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG 126 ||||||| ||||||||||||||| || |||||||||||| ||||| |||| |||| || Sbjct 9672 TCTAAACTCAGCTCACGTTCCCTGTTGGTGGGTGAACAACCCAACACTTATA-AATTATG 9614 Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 |||| ||||||| |||| || |||| |||| || |||| | ||| ||||||||||||| Sbjct 9613 CTTCACGATGATAGCAAGAACCAACATTGAAGTATAAAAAGGTAACATCGCTATGAACGC 9554 Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 ||||||| ||||||| ||||||| || |||||||||||||| Sbjct 9553 TTGGCTGACACAAGCTAGTTATCTCTCTGGTAACTTTTCTG 9513 >seq1637101 Length=225 Score = 156 bits (172), Expect = 7e-36 Identities = 114/131 (87%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 93 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 152 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | Sbjct 153 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTG 212 Query 120 AATTCTGCTTC 130 ||||||||||| Sbjct 213 AATTCTGCTTC 223 >seq799383 Length=1625 Score = 150 bits (166), Expect = 3e-34 Identities = 89/93 (96%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1615 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 1556 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||||||||||||||| || Sbjct 1555 ATGAACGCTTGGCTGCCACAAGCCAGTTATGCC 1523 >seq1794730 Length=456 Score = 149 bits (164), Expect = 1e-33 Identities = 87/90 (97%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 446 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 387 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 |||||||||||||||||||||||||||||| Sbjct 386 ATGAACGCTTGGCTGCCACAAGCCAGTTAT 357 >seq1786476 Length=211 Score = 143 bits (158), Expect = 4e-32 Identities = 93/102 (91%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 ||||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||| | Sbjct 211 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAG 152 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||||||||||||||||||| ||||||||||| ||||||| Sbjct 151 ATCTAAAGGATCGATAGGCCACGCTTTCATGGTTCGTATTCA 110 >seq736425 Length=220 Score = 138 bits (152), Expect = 2e-30 Identities = 81/84 (96%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 84 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 25 Query 91 TTAGTGGGTGAACAATCCAACGCT 114 || |||||||||||||||||| || Sbjct 24 TTGGTGGGTGAACAATCCAACACT 1 >seq372682 Length=1191 Score = 136 bits (150), Expect = 7e-30 Identities = 94/105 (90%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | | || ||||||||||||||||||||||||||||||| Sbjct 104 TACTAGGTTGAATTACTATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 46 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 45 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAA 1 >seq787643 Length=827 Score = 107 bits (118), Expect = 3e-21 Identities = 79/91 (87%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||| | ||| |||| |||||||||||||||||||||||||||||| Sbjct 737 TACTGAGCAGGATTTCTTTTGCAACGACAAGTCATCAGTAGGGTAAAACTAACCTGTCTC 796 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 | ||||||||||||||||||||||||||||| Sbjct 797 ACGACGGTCTAAACCCAGCTCACGTTCCCTA 827 >seq13889 Length=1525 Score = 87.8 bits (96), Expect = 3e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 ||||||||| |||||||||| ||||||||||||||||| ||||| | |||||| || || Sbjct 881 ATCCCTGTGATAACTTTTCTCGCACCTCTAGCCTCAAACTTCGAAGATCTAAAGAATTGA 822 Query 267 TAGGCCAC 274 |||||||| Sbjct 821 TAGGCCAC 814 >seq57130 Length=3464 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || |||| |||| ||||| ||||| Sbjct 873 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 814 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | ||| | | | |||||||||||||||| | |||| Sbjct 813 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 757 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | |||| ||||||||| ||||||||| Sbjct 756 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838863419520